单斜晶系
结晶学
化学
晶体结构
合成子
四方晶系
氢键
晶体工程
卤素
类型(生物学)
Crystal(编程语言)
超分子化学
分子
立体化学
有机化学
生物
计算机科学
程序设计语言
烷基
生态学
作者
Arijit Mukherjee,Gautam R. Desiraju
出处
期刊:IUCrJ
[International Union of Crystallography]
日期:2013-10-18
卷期号:1 (1): 49-60
被引量:192
标识
DOI:10.1107/s2052252513025657
摘要
3,4-Dichlorophenol ( 1 ) crystallizes in the tetragonal space group I 4 1 / a with a short axis of 3.7926 (9) Å. The structure is unique in that both type I and type II Cl...Cl interactions are present, these contact types being distinguished by the angle ranges of the respective C—Cl...Cl angles. The present study shows that these two types of contacts are utterly different. The crystal structures of 4-bromo-3-chlorophenol ( 2 ) and 3-bromo-4-chlorophenol ( 3 ) have been determined. The crystal structure of ( 2 ) is isomorphous to that of ( 1 ) with the Br atom in the 4-position participating in a type II interaction. However, the monoclinic P 2 1 / c packing of compound ( 3 ) is different; while the structure still has O—H...O hydrogen bonds, the tetramer O—H...O synthon seen in ( 1 ) and ( 2 ) is not seen. Rather than a type I Br...Br interaction which would have been mandated if ( 3 ) were isomorphous to ( 1 ) and ( 2 ), Br forms a Br...O contact wherein its electrophilic character is clearly evident. Crystal structures of the related compounds 4-chloro-3-iodophenol ( 4 ) and 3,5-dibromophenol ( 5 ) were also determined. A computational survey of the structural landscape was undertaken for ( 1 ), ( 2 ) and ( 3 ), using a crystal structure prediction protocol in space groups P 2 1 / c and I 4 1 / a with the COMPASS26 force field. While both tetragonal and monoclinic structures are energetically reasonable for all compounds, the fact that ( 3 ) takes the latter structure indicates that Br prefers type II over type I contacts. In order to differentiate further between type I and type II halogen contacts, which being chemically distinct are expected to have different distance fall-off properties, a variable-temperature crystallography study was performed on compounds ( 1 ), ( 2 ) and ( 4 ). Length variations with temperature are greater for type II contacts compared with type I. The type II Br...Br interaction in ( 2 ) is stronger than the corresponding type II Cl...Cl interaction in ( 1 ), leading to elastic bending of the former upon application of mechanical stress, which contrasts with the plastic deformation of ( 1 ). The observation of elastic deformation in ( 2 ) is noteworthy; in that it finds an explanation based on the strengths of the respective halogen bonds, it could also be taken as a good starting model for future property design. Cl/Br isostructurality is studied with the Cambridge Structural Database and it is indicated that this isostructurality is based on shape and size similarity of Cl and Br, rather than arising from any chemical resemblance.
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