翻译(生物学)
信使核糖核酸
非翻译区
生物
蛋白质生物合成
核糖核酸
五素未翻译区
生物物理学
热稳定性
翻译效率
真核翻译
生物化学
分子生物学
细胞生物学
物理
基因
量子力学
作者
Jeremy R. Babendure,Jennie L. Babendure,Jian-Hua Ding,Roger Y. Tsien
出处
期刊:RNA
日期:2006-03-15
卷期号:12 (5): 851-861
被引量:275
摘要
The scanning model of RNA translation proposes that highly stable secondary structures within mRNAs can inhibit translation, while structures of lower thermal stability also affect translation if close enough to the 5′ methyl G cap. However, only fragmentary information is available about the dependence of translation efficiency in live mammalian cells on the thermodynamic stability, location, and GC content of RNA structures in the 5′-untranslated region. We devised a two-color fluorescence assay for translation efficiency in single live cells and compared a wide range of hairpins with predicted thermal stabilities ranging from −10 to −50 kcal/mol and 5′ G cap-to-hairpin distances of 1–46 bases. Translation efficiency decreased abruptly as hairpin stabilities increased from ΔG = −25 to −35 kcal/mol. Shifting a hairpin as little as nine bases relative to the 5′ cap could modulate translation more than 50-fold. Increasing GC content diminished translation efficiency when predicted thermal stability and cap-to-hairpin distances were held constant. We additionally found naturally occurring 5′-untranslated regions affected translation differently in live cells compared with translation in in vitro lysates. Our study will assist scientists in designing experiments that deliberately modulate mammalian translation with designed 5′ UTRs.
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