作者
Saurabh Singh,Srikrishna Subramanian,Neha Gupta,Abhay Bajaj,Natesan Manickam
摘要
• A complete genome sequence of Dietzia harbouring a novel PET hydrolase was characterized. • PET165 hydrolase demonstrated high metabolic stability assimilating phthalates of concern. • The complete pathway of PAEs metabolism is detected on the genome of strain IITR165. • The genome information provides novel gene resources for biotechnology aspects. The Dietzia kunjamensis IITR165 bacterium, capable of degrading dibutyl phthalate (DBP), terephthalate (TPA), and polyethylene terephthalate (PET), was studied to uncover its metabolic pathways. Whole-genome analysis revealed a circular chromosome of 3,477,711 bp and a plasmid of 58,850 bp with 70.6 % GC content. Among 3,311 functional genes, phthalate dioxygenase/decarboxylase ( pad Aa1, pad Ab1, pht B, pht C), alkane monooxygenase ( alk B), di-and mono-alkyl phthalate hydrolase, and extra-diol dioxygenase were identified. Gene clusters for terephthalate ( tph A1A2A3 and tph B), benzoic acid ( ben ABCD), and catechol ( cat ABCD) were also found. Strain IITR165 metabolized of 1000 mg/L of TPA in 96 h with a half-life of 15.36 h −1 , producing phthalic acid (PA), benzoic acid (BA), and catechol as metabolites based on Q-TOF LC/MS-MS analysis. Scanning electron micrograph reveals the extensive biofilm and surface modification of PET sheet after bacterial treatment. A novel PET-hydrolase (PET165) protein, sharing 45.70 % amino acid homology with reported PETases, was discovered, with docking studies showing a conserved catalytic triad (Serine-128, Aspartate-261, and Histidine-287) interacting with the PET ligand. The presence of this novel PET hydrolase and the tpa gene cluster, along with genes involved in nylon, and polystyrene metabolism, indicates versatility of the bacterium useful in treatment of a mixed plastic contaminated ecological niches.