An Original Ferroptosis-Related Gene Signature Effectively Predicts the Prognosis and Clinical Status for Colorectal Cancer Patients

结直肠癌 比例危险模型 基因签名 Lasso(编程语言) 接收机工作特性 癌症 肿瘤科 基因 癌症研究 生物 医学 内科学 遗传学 基因表达 计算机科学 万维网
作者
Yanfei Shao,Hongtao Jia,Ling Huang,Shuchun Li,Chenxing Wang,Batuer Aikemu,Guang Yang,Hiju Hong,Xiao Yang,Sen Zhang,Jing Ping Sun,Minhua Zheng
出处
期刊:Frontiers in Oncology [Frontiers Media]
卷期号:11 被引量:69
标识
DOI:10.3389/fonc.2021.711776
摘要

Colorectal cancer (CRC) is one of the most common malignant tumors in the world. Ferroptosis is a newly defined form of cell death, distinguished by different morphology, biochemistry, and genetics, and involved in CRC progression and treatment. This study aims to establish a predictive model to elucidate the relationship between ferroptosis and prognosis of CRC patients, to explore the potential value of ferroptosis in therapeutic options.The ferroptosis-related genes were obtained from the GeneCards and FerrDb websites. The limma R package was used to screen the differential ferroptosis-related genes (DEGs) in CRC from The Cancer Genome Atlas (TCGA) dataset. The least absolute shrinkage and selection operator (LASSO) and multivariate Cox regressions were to establish the 10-gene prognostic signature. The survival and receiver operating characteristic (ROC) curves were illustrated to evaluate the predictive effect of the signature. Besides, independent prognostic factors, downstream functional enrichment, drug sensitivity, somatic mutation status, and immune feature were analyzed. Moreover, all these conclusions were verified by using multiple datasets in International Cancer Genome Consortium (ICGC) and Gene Expression Omnibus (GEO).Ten ferroptosis-related gene signature (TFAP2C, SLC39A8, NOS2, HAMP, GDF15, FDFT1, CDKN2A, ALOX12, AKR1C1, ATP6V1G2) was established to predict the prognosis of CRC patients by Lasso cox analysis, demonstrating a good performance on Receiver operating characteristic (ROC) and Kaplan-Meier (K-M) analyses. The CRC patients in the high- or low-risk group showed significantly different fractions of immune cells, such as macrophage cells and CD8+ T cells. Drug sensitivity and somatic mutation status like TP53 were also closely associated with the risk scores.In this study, we identified a novel ferroptosis-related 10-gene signature, which could effectively predict the prognosis and survival time of CRC patients, and provide meaningful clinical implications for targeted therapy or immunotherapy. Targeting ferroptosis is a good therapeutic option for CRC patients. Further studies are needed to reveal the underlying mechanisms of ferroptosis in CRC.

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
刚刚
刚刚
今后的应助被苏苏诺诺2023采纳,获得10
1秒前
TanFT发布了新的文献求助20
1秒前
2秒前
景明发布了新的文献求助10
4秒前
谨慎青枫的应助被魔幻冰棍采纳,获得10
5秒前
6秒前
6秒前
果称完成签到,获得积分10
6秒前
健壮土豆发布了新的文献求助30
7秒前
蹇蹇完成签到 ,获得积分10
7秒前
齐天小圣完成签到 ,获得积分10
8秒前
一只沉溺的鱼关注了科研通微信公众号
8秒前
Brilliant发布了新的文献求助10
9秒前
10秒前
10秒前
跳跃芷蕊完成签到,获得积分10
12秒前
wangyujie完成签到,获得积分10
12秒前
冷傲的道罡完成签到,获得积分10
12秒前
12秒前
13秒前
小怪兽完成签到,获得积分10
14秒前
科研通AI6.4的应助被ACRS采纳,获得10
14秒前
TanFT完成签到,获得积分10
15秒前
16秒前
16秒前
Narcissus发布了新的文献求助10
16秒前
louis发布了新的文献求助10
17秒前
bh发布了新的文献求助30
17秒前
张海蓉完成签到 ,获得积分10
17秒前
sandy完成签到,获得积分10
18秒前
杨柳发布了新的文献求助10
19秒前
小蘑菇的应助被semua采纳,获得10
20秒前
22秒前
23秒前
24秒前
25秒前
26秒前
jgaotao发布了新的文献求助10
28秒前
高分求助中
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
Rosenblum, Global Change Biology 800
自動車の空力技術 800
Organizational Behavior 510
Management and the Arts 510
Issues in Task-Based Language Teaching 500
Wafer Surface Defect 420
热门求助领域 (近24小时)
化学 材料科学 医学 生物 纳米技术 计算机科学 化学工程 工程类 有机化学 物理 复合材料 生物化学 内科学 细胞生物学 基因 遗传学 免疫学 冶金 光电子学 癌症研究
热门帖子
关注 科研通微信公众号,转发送积分 7784635
求助须知:如何正确求助?哪些是违规求助? 9323917
关于积分的说明 20395985
捐赠科研通 7373351
什么是DOI,文献DOI怎么找? 3321092
关于科研通互助平台的介绍 2469015
邀请新用户注册赠送积分活动 2337355