已入深夜,您辛苦了!由于当前在线用户较少,发布求助请尽量完整的填写文献信息,科研通机器人24小时在线,伴您度过漫漫科研夜!祝你早点完成任务,早点休息,好梦!

An Original Ferroptosis-Related Gene Signature Effectively Predicts the Prognosis and Clinical Status for Colorectal Cancer Patients

结直肠癌 比例危险模型 基因签名 Lasso(编程语言) 接收机工作特性 癌症 肿瘤科 基因 癌症研究 生物 医学 内科学 遗传学 基因表达 计算机科学 万维网
作者
Yanfei Shao,Hongtao Jia,Ling Huang,Shuchun Li,Chenxing Wang,Batuer Aikemu,Guang Yang,Hiju Hong,Xiao Yang,Sen Zhang,Jing Ping Sun,Minhua Zheng
出处
期刊:Frontiers in Oncology [Frontiers Media]
卷期号:11 被引量:69
标识
DOI:10.3389/fonc.2021.711776
摘要

Colorectal cancer (CRC) is one of the most common malignant tumors in the world. Ferroptosis is a newly defined form of cell death, distinguished by different morphology, biochemistry, and genetics, and involved in CRC progression and treatment. This study aims to establish a predictive model to elucidate the relationship between ferroptosis and prognosis of CRC patients, to explore the potential value of ferroptosis in therapeutic options.The ferroptosis-related genes were obtained from the GeneCards and FerrDb websites. The limma R package was used to screen the differential ferroptosis-related genes (DEGs) in CRC from The Cancer Genome Atlas (TCGA) dataset. The least absolute shrinkage and selection operator (LASSO) and multivariate Cox regressions were to establish the 10-gene prognostic signature. The survival and receiver operating characteristic (ROC) curves were illustrated to evaluate the predictive effect of the signature. Besides, independent prognostic factors, downstream functional enrichment, drug sensitivity, somatic mutation status, and immune feature were analyzed. Moreover, all these conclusions were verified by using multiple datasets in International Cancer Genome Consortium (ICGC) and Gene Expression Omnibus (GEO).Ten ferroptosis-related gene signature (TFAP2C, SLC39A8, NOS2, HAMP, GDF15, FDFT1, CDKN2A, ALOX12, AKR1C1, ATP6V1G2) was established to predict the prognosis of CRC patients by Lasso cox analysis, demonstrating a good performance on Receiver operating characteristic (ROC) and Kaplan-Meier (K-M) analyses. The CRC patients in the high- or low-risk group showed significantly different fractions of immune cells, such as macrophage cells and CD8+ T cells. Drug sensitivity and somatic mutation status like TP53 were also closely associated with the risk scores.In this study, we identified a novel ferroptosis-related 10-gene signature, which could effectively predict the prognosis and survival time of CRC patients, and provide meaningful clinical implications for targeted therapy or immunotherapy. Targeting ferroptosis is a good therapeutic option for CRC patients. Further studies are needed to reveal the underlying mechanisms of ferroptosis in CRC.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
Lucas应助科研通管家采纳,获得10
刚刚
刚刚
彭于晏应助科研通管家采纳,获得10
1秒前
sarmad完成签到,获得积分10
1秒前
2秒前
FF完成签到 ,获得积分10
3秒前
任性的冷梅完成签到,获得积分10
3秒前
3秒前
小橙子完成签到 ,获得积分10
3秒前
3秒前
思源应助jiangjiang采纳,获得10
7秒前
SciGPT应助向天歌采纳,获得10
7秒前
粽子发布了新的文献求助10
9秒前
清秀完成签到,获得积分10
9秒前
金先生发布了新的文献求助10
9秒前
FashionBoy应助ni采纳,获得10
10秒前
11秒前
12秒前
1212发布了新的文献求助10
13秒前
wanci应助年轻映天采纳,获得10
14秒前
lemon发布了新的文献求助10
16秒前
汉堡包应助龙微微采纳,获得10
16秒前
Owen应助李晨源采纳,获得10
17秒前
17秒前
烂漫念文发布了新的文献求助10
17秒前
17秒前
可靠冰凡完成签到,获得积分10
18秒前
20秒前
毛dandan完成签到,获得积分10
21秒前
21秒前
23秒前
YsGao发布了新的文献求助10
24秒前
24秒前
岁月静好Taoyi完成签到 ,获得积分10
25秒前
向天歌发布了新的文献求助10
27秒前
28秒前
29秒前
lemon完成签到,获得积分10
29秒前
30秒前
ggggg完成签到 ,获得积分10
31秒前
高分求助中
Encyclopedia of Mathematical Physics 2nd edition 888
Chinesen in Europa – Europäer in China: Journalisten, Spione, Studenten 500
Arthur Ewert: A Life for the Comintern 500
China's Relations With Japan 1945-83: The Role of Liao Chengzhi // Kurt Werner Radtke 500
Two Years in Peking 1965-1966: Book 1: Living and Teaching in Mao's China // Reginald Hunt 500
材料概论 周达飞 ppt 500
Nonrandom distribution of the endogenous retroviral regulatory elements HERV-K LTR on human chromosome 22 500
热门求助领域 (近24小时)
化学 材料科学 医学 生物 工程类 有机化学 物理 生物化学 纳米技术 计算机科学 化学工程 内科学 复合材料 物理化学 电极 遗传学 量子力学 基因 冶金 催化作用
热门帖子
关注 科研通微信公众号,转发送积分 3807797
求助须知:如何正确求助?哪些是违规求助? 3352436
关于积分的说明 10359243
捐赠科研通 3068570
什么是DOI,文献DOI怎么找? 1685031
邀请新用户注册赠送积分活动 810245
科研通“疑难数据库(出版商)”最低求助积分说明 765932