肌苷
鸟苷
核糖核酸
RNA沉默
计算生物学
DNA
鉴定(生物学)
DNA测序
生物
遗传学
RNA编辑
计算机科学
序列(生物学)
基因
RNA干扰
生物化学
酶
植物
作者
Roni Cohen‐Fultheim,Erez Y. Levanon
出处
期刊:Methods in molecular biology
日期:2020-07-30
卷期号:: 213-227
被引量:3
标识
DOI:10.1007/978-1-0716-0787-9_13
摘要
Following A-to-I editing of double-stranded RNA (dsRNA) molecules, sequencing reactions interpret the edited inosine (I) as guanosine (G). For this reason, current methods to detect A-to-I editing sites work to align RNA sequences to their reference DNA sequence in order to reveal A-to-G mismatches. However, areas with heavily edited reads produce dense clusters of A-to-G mismatches that hinder alignment, and complicate correct identification of the sites. The presented approach employs prudent alignment and examination of excessive mismatch events, enabling high-accuracy detection of hyper-edited reads and sites.
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