In silico modeling-based new alternative methods to predict drug and herb-induced liver injury: A review

生物信息学 可解释性 肝损伤 机器学习 计算机科学 数量结构-活动关系 药物发现 人工智能 药品 不良结局途径 肝毒性 药物开发 深度学习 计算生物学 数据挖掘 生物信息学 药理学 医学 生物 基因 内科学 生物化学 毒性
作者
Hyun Kil Shin,Ruili Huang,Minjun Chen
出处
期刊:Food and Chemical Toxicology [Elsevier BV]
卷期号:179: 113948-113948 被引量:14
标识
DOI:10.1016/j.fct.2023.113948
摘要

New approach methods (NAMs) have been developed to predict a wide range of toxicities through innovative technologies. Liver injury is one of the most extensively studied endpoints due to its severity and frequency, occurring among populations that consume drugs or dietary supplements. In this review, we focus on recent developments of in silico modeling for liver injury prediction using deep learning and in vitro data based on adverse outcome pathways (AOPs). Despite these models being mainly developed using datasets generated from drug-like molecules, they were also applied to the prediction of hepatotoxicity caused by herbal products. As deep learning has achieved great success in many different fields, advanced machine learning algorithms have been actively applied to improve the accuracy of in silico models. Additionally, the development of liver AOPs, combined with big data in toxicology, has been valuable in developing in silico models with enhanced predictive performance and interpretability. Specifically, one approach involves developing structure-based models for predicting molecular initiating events of liver AOPs, while others use in vitro data with structure information as model inputs for making predictions. Even though liver injury remains a difficult endpoint to predict, advancements in machine learning algorithms and the expansion of in vitro databases with relevant biological knowledge have made a huge impact on improving in silico modeling for drug-induced liver injury prediction.
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