医学
单核苷酸多态性
错义突变
SNP公司
遗传倾向
遗传学
遗传关联
全基因组关联研究
生物信息学
基因
内科学
队列
人口
优势比
突变
基因型
生物
疾病
环境卫生
作者
Nicholas Theodore,Ali Ahmed,Travis Fulton,Spyro Mousses,Christopher S. Yoo,C. Rory Goodwin,Jill Danielson,Daniel M. Sciubba,Morgan B. Giers,M. Yashar S. Kalani
出处
期刊:Spine
[Lippincott Williams & Wilkins]
日期:2018-11-21
卷期号:44 (11): E640-E649
被引量:20
标识
DOI:10.1097/brs.0000000000002949
摘要
Study Design. Case-control whole-genome sequencing analysis of a highly select, young cohort with symptomatic lumbar disk herniation (LDH) compared with the standard variation in a large reference population. Objective. To assess genetic influences predisposing pediatric and young adult patients to symptomatic LDH. Summary of Background Data. LDH has traditionally been attributed to natural weakening or mechanical insult, but recent literature supports a potential genetic influence. Methods. Young patients with symptomatic, clinically confirmed LDH who underwent surgical treatment were included. Patients were younger than the average age of presentation, limiting the influence of environmental risks. DNA collected from these patients was compared with a reference genome (1000 Genomes Project). A genome-wide association study using whole-genome sequencing was used to characterize genetic mutations potentially associated with LDH. Results. Among the 61 candidate genes flagged, 20 had missense mutations in 2 or more LDH cases. Missense mutations in collagen-encoding genes were observed in 12 of 15 patients (80%). A potential association with clinical presentation was indicated by odds ratios of key single-nucleotide polymorphism (SNP) variants in genes that encode collagen. Relative to the reference population, the LDH cohort demonstrated two statistically significant SNP variants in the gene encoding for aggrecan, a protein that facilitates load-bearing properties in the cartilaginous end plate. Aggrecan genes SNPs rs3817428 and rs11638262 were significantly associated with decreased odds of symptomatic LDH: odds ratio 0.05 (0.02–0.11) and 0.04 (0–0.26), respectively ( P < 1 × 10 –7 for both). Conclusion. These results suggest that collagen-encoding variants may be a genetic risk factor for LDH. They also shed new light on the role of variants that impact aggrecan, which sustains the cartilaginous end plate. Genetic predisposition to LDH may therefore be related to a multimodal combination of mutations that affect the nucleus pulposus, annulus fibrosus, and the cartilaginous end plates. Level of Evidence: 4
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