ABSTRACT Natural metalloenzymes achieve exceptional catalytic efficiency and specificity through substrate‐induced conformational locking (SCL) across bimetallic sites. However, most nanozymes lack such adaptive microenvironments and dynamic regulatory capabilities. We reported a spatially ordered bimetallic nanozyme, o‐FePd DAN, with a Cl‐FeN 3 C‐PdN 3 catalytic center that emulated the SCL mechanism through directional electron transfer (DET) and axial microenvironment reconfiguration. Density functional theory (DFT) calculations showed that the Fe‐Pd configuration provides optimal H 2 O 2 adsorption, the lowest O‐O dissociation energy, and enhanced activation of reactive oxygen species (ROS). Meanwhile, operando X‐ray absorption spectroscopy reveals the formation of a bridged structure at the bimetallic site during catalysis, establishing a dynamic charge‐transfer pathway that switches the dominant reaction from ROS‐mediated oxidation to a DET process driven by the bridged structure. This adaptive electron modulation arises from d‐orbital hybridization and the emergence of new active states near the Fermi level in the Cl‐FeN 3 C‐PdN 3 site. Furthermore, o‐FePd DAN is integrated into a three‐channel visual origami sensing (Tc‐VOS) platform for multichannel genotyping of human papillomavirus (HPV) subtypes. This work demonstrates a strategy for constructing spatially ordered bimetallic DANs that reproduce the SCL effect of natural enzymes and establish a dynamic, conformationally adaptive catalytic mechanism for nanozyme design.