全基因组关联研究
候选基因
单核苷酸多态性
基因分型
遗传学
SNP基因分型
遗传关联
生物
SNP公司
人口
基因
基因型
医学
环境卫生
作者
Yang Li,Han Yan,Xiao‐Li Tian
标识
DOI:10.3760/cma.j.issn.0254-9026.2019.07.004
摘要
Objective
To identify new susceptibility genes for coronary artery disease(CAD)by integrating genome wide association study and gene expression profiling.
Methods
On account of our data of genome wide association study(GWAS)on CAD, our integrative analysis of gene expression profiles and GWAS for CAD was conducted, and we obtained candidate genes and single nucleotide polymorphisms(SNPs)for a multicenter case-control genetic association study.Using a DNA ligase chain reaction-based genotyping method, we validated these candidate loci in two independent populations.
Results
Firstly, we selected 21 SNPs for 21 candidate genes.Using a DNA ligase chain reaction-based genotyping method, we validated these candidate loci in two independent populations, including population 1(495 cases and 492 control)and population 2(810 cases and 853 control). And we identified an intragenic SNP rs11208367(ROR1), which was significantly associated with CAD.Meta confluence analysis in combination of GWAS and two validation populations showed that the P value of rs11208367 was 2.00×10-4, which was still significant after Bonferroni multiple test correction(0.05/21=2.38×10-3).
Conclusions
The rs11208367 SNP of ROR1gene is significantly associated with CAD, indicating that ROR1is a novel susceptibility gene for CAD.
Key words:
Genomics; Coronary disease; Genetic predisposition to disease
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