Integration of LC/MS, NMR and Molecular Docking for Profiling of Bioactive Diterpenes from Euphorbia mauritanica L. with in Vitro Anti‐SARS‐CoV‐2 Activity

化学 生物信息学 体外 立体化学 对接(动物) 计算生物学 组合化学 传统医学 生物化学 生物 医学 基因 护理部
作者
Ahmed F. Essa,Seham S. El‐Hawary,Tahia M. Kubacy,Ezz El-Din A.M. El-Khrisy,Ahmed H. El‐Desoky,Abdelsamed I. Elshamy,Inas Y. Younis
出处
期刊:Chemistry & Biodiversity [Wiley]
卷期号:20 (2)
标识
DOI:10.1002/cbdv.202200918
摘要

In spite of tremendous efforts exerted in the management of COVID-19, the absence of specific treatments and the prevalence of delayed and long-term complications termed post-COVID syndrome still urged all concerned researchers to develop a potent inhibitor of SARS-Cov-2. The hydromethanolic extracts of different parts of E. mauritanica were in vitro screened for anti-SARS-Cov-2 activity. Then, using an integrated strategy of LC/MS/MS, molecular networking and NMR, the chemical profile of the active extract was determined. To determine the optimum target for these compounds, docking experiments of the active extract's identified compounds were conducted at several viral targets. The leaves extract showed the best inhibitory effect with IC50 8.231±0.04 μg/ml. The jatrophane diterpenes were provisionally annotated as the primary metabolites of the bioactive leaves extract based on multiplex of LC/MS/MS, molecular network, and NMR. In silico studies revealed the potentiality of the compounds in the most active extract to 3CLpro, where compound 20 showed the best binding affinity. Further attention should be paid to the isolation of various jatrophane diterpenes from Euphorbia and evaluating their effects on SARS-Cov-2 and its molecular targets.
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