A CRISPR/Cas12a-based DNAzyme visualization system for rapid, non-electrically dependent detection of Bacillus anthracis

炭疽杆菌 清脆的 计算生物学 脱氧核酶 可视化 生物 计算机科学 遗传学 DNA 数据挖掘 基因 细菌
作者
Dongshu Wang,Gang Chen,Yufei Lyu,Erling Feng,Li Zhu,Chao Pan,Weicai Zhang,Xiankai Liu,Hengliang Wang
出处
期刊:Emerging microbes & infections [Taylor & Francis]
卷期号:11 (1): 429-438 被引量:23
标识
DOI:10.1080/22221751.2021.2012091
摘要

As next-generation pathogen detection methods, CRISPR-Cas-based detection methods can perform single-nucleotide polymorphism (SNP) level detection with high sensitivity and good specificity. They do not require any particular equipment, which opens up new possibilities for the accurate detection and identification of Bacillus anthracis. In this study, we developed a complete detection system for B. anthracis based on Cas12a. We used two chromosomally located SNP targets and two plasmid targets to identify B. anthracis with high accuracy. The CR5 target is completely new. The entire detection process can be completed within 90 min without electrical power and with single-copy level sensitivity. We also developed an unaided-eye visualization system based on G4-DNAzyme for use with our CRISPR-Cas12a detection system. This visualization system has good prospects for deployment in field-based point-of-care detection. We used the antisense nucleic acid CatG4R as the detection probe, which showed stronger resistance to interference from components of the solution. CatG4R can also be designed as an RNA molecule for adaptation to Cas13a detection, thereby broadening the scope of the detection system.

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