Knockout of microphthalmia-associated transcription factor (mitf) confers a red and yellow tilapia with few pigmented melanophores

As the most important genetic factor for melanophore differentiation and melanogenesis, mitf has been studied for over 30 years. The phenotypes of mitf mutants have also received continuous attention for nearly a century. Due to the third round of genome duplication, teleosts have two mitf genes. Mutation analysis demonstrates that mitfa plays an important role in zebrafish pigmentation. However, there have been no functional studies on body color regulation by mitfb or studies of mitfa;mitfb double mutants. In the present study, we mutated both mitf genes in tilapia using CRISPR/Cas9. Disruption of mitfa resulted in light yellow body color with weak gray vertical bars due to significantly reduced numbers of melanophores and increased sizes of xanthophores, while disruption of mitfb led to slight hypo-pigmentation. Double mutation of mitfa and mitfb resulted in dramatic hypo-pigmentation in trunk and fins due to loss of additional melanophores and increase in the number of iridophores compared to the single mutants, but had no influence on retinal pigment epithelium (RPE) pigmentation. The mitfa−/−;mitfb−/− mutants were yellow with black spots at early juvenile stage (60 dpf), yellow-reddish at late juvenile stage (120 dpf) and red and yellow (including iris) at adult stage (180 dpf), due to increased erythrophores and enlarged xanthophores. Our results demonstrated that both mitf genes are important for body color formation in tilapia, but mitfa plays a more important role than mitfb. Additionally, by comparing the phenotypes of the mitfa−/−;mitfb−/−, pmela−/−;pmelb−/− and hps4−/− mutants, we found that disruption of genes with different functions in different aspects of melanogenesis could lead to different body colors in tilapia. Mitf is the most important gene for melanophore differentiation and is probably also critical for differentiation of erythrophores, xanthophores and iridophores. To our knowledge, this is the first report showing that both mitf genes are involved in body color formation by loss of function study, and the first report showing that erythrophore numbers and xanthophore sizes were affected by mitf. Our research not only serves as a model for studying mitf function in tilapia and the closely related cichlids, but also provides new strategies for breeding red and yellow tilapia for aquaculture.