Molecular Dynamics Simulation of the Interaction of Lipidated Structurally Nano Engineered Antimicrobial Peptide Polymers with Bacterial Cell Membrane

The rapid emergence of multidrug-resistant (MDR) bacteria demands development of novel and effective antimicrobial agents. Structurally nanoengineered antimicrobial peptide polymers (SNAPPs), characterized by their unique star-shaped architecture and potent multivalent interactions, represent a promising solution. This study leverages molecular dynamics simulations to investigate the impact of lipidation on SNAPPs' structural stability, membrane interactions, and antibacterial efficacy. We show that lipidation with hexanoic acid (C6), lauric acid (C12), and stearic acid (C18) enhances the α-helical stability of SNAPP arms, facilitating deeper insertion into the hydrophobic core of bacterial membranes. Among the variants, C12-SNAPP exhibits the most significant bilayer disruption, followed by C6-SNAPP, whereas the excessive hydrophobicity of C18-SNAPP leads to pronounced arm back-folding toward the core, reducing its effective interaction with the bilayer and limiting its bactericidal performance. Additionally, potential of mean force (PMF) analysis reveals that lipidation reduces the free energy barrier for translocation through the bilipid membrane compared to nonlipidated SNAPPs. These findings underscore the critical role of lipidation in optimizing SNAPPs for combating MDR pathogens. By fine-tuning lipid chain lengths, this study provides a framework for designing next-generation antimicrobial agents to address the global antibiotic resistance crisis, advancing modern therapeutic strategies.