生物
尖孢镰刀菌
基因组
基因
遗传学
毒力
黄瓜花叶病毒
植物
核糖核酸
作者
Qian Wang,Jingjing Yang,Aijun Mao,Jian Zhang,Xiaofei Zhang,Chuangxuan Xia,Hong Zhao,Yixin Wang,Changlong Wen,Hui Liu
出处
期刊:Plant Disease
[Scientific Societies]
日期:2023-04-01
卷期号:107 (4): 1210-1213
被引量:1
标识
DOI:10.1094/pdis-08-22-1815-a
摘要
Fusarium oxysporum f. sp. cucumerinum, which causes root and vascular wilting, is one of the most devastating diseases infecting cucumber. Here, we report the first genome resource with high-quality assembly for F. oxysporum f. sp. cucumerinum strain Race-4, which is primarily endemic to China. The genome was 59.11 Mb in size and consisted of 48 scaffolds with an N50 of 3.87 Mb using PacBio long reads (301.77×) sequencing, and encodes 14,898 proteins from analyzing RNA-seq data. Gene annotations identified pathogen-host interaction genes, fungal virulence factors, secreted proteins, transcription factors, and secondary metabolite biosynthesis gene. Moreover, functional genes reported in previous studies were also identified in the genome of Race-4. These genes and genome resource may play important roles in understanding F. oxysporum f. sp. cucumerinum-cucumber interactions and will be useful for further research.
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