Disulfide bridge-targeted metabolome mining unravels an antiparkinsonian peptide

桥(图论) 二硫键 计算生物学 化学 代谢组 生物化学 计算机科学 数据挖掘 生物信息学 生物 医学 内科学 代谢物
作者
Zhiwu Tong,Xia‐Hong Xie,Hui Ming Ge,Rui‐Hua Jiao,Tingting Wang,Xin‐Cun Wang,Wen-Ying Zhuang,Gang Hu,Renxiang Tan
出处
期刊:Acta Pharmaceutica Sinica B [Elsevier BV]
卷期号:14 (2): 881-892 被引量:2
标识
DOI:10.1016/j.apsb.2023.09.006
摘要

Peptides are a particular molecule class with inherent attributes of some small-molecule drugs and macromolecular biologics, thereby inspiring continuous searches for peptides with therapeutic and/or agrochemical potentials. However, the success rate is decreasing, presumably because many interesting but less-abundant peptides are so scarce or labile that they are likely 'overlooked' during the characterization effort. Here, we present the biochemical characterization and druggability improvement of an unprecedented minor fungal RiPP (ribosomally synthesized and post-translationally modified peptide), named acalitide, by taking the relevant advantages of metabolomics approach and disulfide-bridged substructure which is more frequently imprinted in the marketed peptide drug molecules. Acalitide is biosynthetically unique in the macrotricyclization via two disulfide bridges and a protease (AcaB)-catalyzed lactamization of AcaA, an unprecedented precursor peptide. Such a biosynthetic logic was successfully re-edited for its sample supply renewal to facilitate the identification of the in vitro and in vivo antiparkinsonian efficacy of acalitide which was further confirmed safe and rendered brain-targetable by the liposome encapsulation strategy. Taken together, the work updates the mining strategy and biosynthetic complexity of RiPPs to unravel an antiparkinsonian drug candidate valuable for combating Parkinson's disease that is globally prevailing in an alarming manner.
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