Spinel lithium titanate oxide (Li4Ti5O12, LTO) is a promising electrode material with a maximum capacity of 295 mAh·g−1 that accommodate 5Li ions at 0.01 V. However, upon accepting 2Li ions at Wyckoff site 8a at low potentials, its capacity and stability significantly decrease because of the short Li-Li distance. To address this issue, we synthesize defective LTO (d-LTO) nanoparticles via the calcination of porous LTO. Notably, the discharge capacity of d-LTO is close to the theoretical value, and does not lead to structural decomposition in the voltage range of 3.0–0.01 V. d-LTO retain 95 % of their initial capacity after 100 cycles with a coulombic efficiency of 99.8 %. In situ synchrotron PXRD analysis and the density functional theory calculations unequivocally demonstrate the high stability of d-LTO during cyclic charge/discharge. Therefore, this simple strategy will provide insight into novel Li-ion electrode materials with high capacity and long-term stability.