Identification of MACC1 as a potential biomarker for pulmonary arterial hypertension based on bioinformatics and machine learning

生物标志物 鉴定(生物学) 肺动脉高压 医学 计算机科学 慢性血栓栓塞性肺高压 机器学习 生物信息学 人工智能 心脏病学 计算生物学 化学 生物 生物化学 植物
作者
Xinyi Zhou,Benhui Liang,Wenchao Lin,Lihuang Zha
出处
期刊:Computers in Biology and Medicine [Elsevier BV]
卷期号:173: 108372-108372 被引量:12
标识
DOI:10.1016/j.compbiomed.2024.108372
摘要

Pulmonary arterial hypertension (PAH) is a life-threatening disease characterized by abnormal early activation of pulmonary arterial smooth muscle cells (PASMCs), yet the underlying mechanisms remain to be elucidated. Normal and PAH gene expression profiles were obtained from the Gene Expression Omnibus (GEO) database and analyzed using gene set enrichment analysis (GSEA) to uncover the underlying mechanisms. Weighted gene co-expression network analysis (WGCNA) and machine learning methods were deployed to further filter hub genes. A number of immune infiltration analysis methods were applied to explore the immune landscape of PAH. Enzyme-linked immunosorbent assay (ELISA) was employed to compare MACC1 levels between PAH and normal subjects. The important role of MACC1 in the progression of PAH was verified through Western blot and real-time qPCR, among others. 39 up-regulated and 7 down-regulated genes were identified by 'limma' and 'RRA' packages. WGCNA and machine learning further narrowed down the list to 4 hub genes, with MACC1 showing strong diagnostic capacity. In vivo and in vitro experiments revealed that MACC1 was highsly associated with malignant features of PASMCs in PAH. These findings suggest that targeting MACC1 may offer a promising therapeutic strategy for treating PAH, and further clinical studies are warranted to evaluate its efficacy.
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