Case of CLPB deficiency solved by HiFi long read genome sequencing and RNAseq

中心(范畴论) 图书馆学 基因组医学 历史 艺术史 老年学 医学 生物 计算生物学 结晶学 计算机科学 化学
作者
Emily Farrow,Allison Jay,John C. Means,Scott T. Younger,Rebecca Biswell,Boryana Koseva,Isabelle Thiffault,Tomi Pastinen,Kara Pappas,Helga V. Toriello
出处
期刊:American Journal of Medical Genetics [Wiley]
卷期号:191 (12): 2908-2912 被引量:1
标识
DOI:10.1002/ajmg.a.63365
摘要

American Journal of Medical Genetics Part AEarly View RESEARCH LETTER Case of CLPB deficiency solved by HiFi long read genome sequencing and RNAseq Emily Farrow, Emily Farrow Genomic Medicine Center, Children's Mercy Kansas City, Kansas City, Missouri, USASearch for more papers by this authorAllison Jay, Corresponding Author Allison Jay [email protected] orcid.org/0000-0003-2252-6954 Ascension St. John, Detroit, Michigan, USA Correspondence Allison Jay, Ascension St. John, 19229 Mack Ave, Detroit, MI 48236, USA. Email: [email protected]Search for more papers by this authorJohn Means, John Means Genomic Medicine Center, Children's Mercy Kansas City, Kansas City, Missouri, USASearch for more papers by this authorScott Younger, Scott Younger Genomic Medicine Center, Children's Mercy Kansas City, Kansas City, Missouri, USASearch for more papers by this authorRebecca Biswell, Rebecca Biswell Genomic Medicine Center, Children's Mercy Kansas City, Kansas City, Missouri, USASearch for more papers by this authorBoryana Koseva, Boryana Koseva Genomic Medicine Center, Children's Mercy Kansas City, Kansas City, Missouri, USASearch for more papers by this authorIsabelle Thiffault, Isabelle Thiffault orcid.org/0000-0001-7987-6731 Genomic Medicine Center, Children's Mercy Kansas City, Kansas City, Missouri, USASearch for more papers by this authorTomi Pastinen, Tomi Pastinen Genomic Medicine Center, Children's Mercy Kansas City, Kansas City, Missouri, USASearch for more papers by this authorKara Pappas, Kara Pappas orcid.org/0000-0001-7270-7724 Genetics, Dayton Children's Hospital, Dayton, Ohio, USASearch for more papers by this authorHelga Toriello, Helga Toriello College of Human Medicine, Michigan State University, Grand Rapids, Michigan, USASearch for more papers by this author Emily Farrow, Emily Farrow Genomic Medicine Center, Children's Mercy Kansas City, Kansas City, Missouri, USASearch for more papers by this authorAllison Jay, Corresponding Author Allison Jay [email protected] orcid.org/0000-0003-2252-6954 Ascension St. John, Detroit, Michigan, USA Correspondence Allison Jay, Ascension St. John, 19229 Mack Ave, Detroit, MI 48236, USA. Email: [email protected]Search for more papers by this authorJohn Means, John Means Genomic Medicine Center, Children's Mercy Kansas City, Kansas City, Missouri, USASearch for more papers by this authorScott Younger, Scott Younger Genomic Medicine Center, Children's Mercy Kansas City, Kansas City, Missouri, USASearch for more papers by this authorRebecca Biswell, Rebecca Biswell Genomic Medicine Center, Children's Mercy Kansas City, Kansas City, Missouri, USASearch for more papers by this authorBoryana Koseva, Boryana Koseva Genomic Medicine Center, Children's Mercy Kansas City, Kansas City, Missouri, USASearch for more papers by this authorIsabelle Thiffault, Isabelle Thiffault orcid.org/0000-0001-7987-6731 Genomic Medicine Center, Children's Mercy Kansas City, Kansas City, Missouri, USASearch for more papers by this authorTomi Pastinen, Tomi Pastinen Genomic Medicine Center, Children's Mercy Kansas City, Kansas City, Missouri, USASearch for more papers by this authorKara Pappas, Kara Pappas orcid.org/0000-0001-7270-7724 Genetics, Dayton Children's Hospital, Dayton, Ohio, USASearch for more papers by this authorHelga Toriello, Helga Toriello College of Human Medicine, Michigan State University, Grand Rapids, Michigan, USASearch for more papers by this author First published: 07 August 2023 https://doi.org/10.1002/ajmg.a.63365Read the full textAboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Share a linkShare onEmailFacebookTwitterLinkedInRedditWechat REFERENCES Cohen, A. S. A., Farrow, E. G., Abdelmoity, A. T., Alaimo, J. T., Amudhavalli, S. M., Anderson, J. T., Bansal, L., Bartik, L., Baybayan, P., Belden, B., Berrios, C. D., Biswell, R. L., Buczkowicz, P., Buske, O., Chakraborty, S., Cheung, W. A., Coffman, K. A., Cooper, A. M., Cross, L. A., … Pastinen, T. (2022). Genomic answers for children: Dynamic analyses of >1000 pediatric rare disease genomes. Genetics in Medicine, 24, 1336–1348. https://doi.org/10.1016/j.gim.2022.02.007 Conlin, L. K., Aref-Eshghi, E., McEldrew, D. A., Luo, M., & Rajagopalan, R. (2022). Long-read sequencing for molecular diagnostics in constitutional genetic disorders. Human Mutation, 43, 1531–1544. https://doi.org/10.1002/humu.24465 Cupo, R. R., & Shorter, J. (2020). Skd3 (human ClpB) is a potent mitochondrial protein disaggregase that is inactivated by 3-methylglutaconic aciduria-linked mutations. eLife, 9, e55279. https://doi.org/10.7554/eLife.55279 Manickam, K., McClain, M. R., Demmer, L. A., Biswas, S., Kearney, H. M., Malinowski, J., Massingham, L. J., Miller, D., Yu, T. W., Hisama, F. M., & ACMG Board of Directors. (2021). Exome and genome sequencing for pediatric patients with congenital anomalies or intellectual disability: An evidence-based clinical guideline of the American College of Medical Genetics and Genomics (ACMG). Genetics in Medicine, 23, 2029–2037. https://doi.org/10.1038/s41436-021-01242-6 Richards, S., Aziz, N., Bale, S., Bick, D., Das, S., Gastier-Foster, J., Grody, W. W., Hegde, M., Lyon, E., Spector, E., Voelkerding, K., Rehm, H. L., & ACMG Laboratory Quality Assurance Committee. (2015). Standards and guidelines for the interpretation of sequence variants: A joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genetics in Medicine, 17, 405–424. https://doi.org/10.1038/gim.2015.30 Robinson, J. T., Thorvaldsdottir, H., Wenger, A. M., Zehir, A., & Mesirov, J. P. (2017). Variant review with the integrative genomics viewer. Cancer Research, 77, e31–e34. https://doi.org/10.1158/0008-5472.CAN-17-0337 Robinson, J. T., Thorvaldsdottir, H., Winckler, W., Guttman, M., Lander, E. S., Getz, G., & Mesirov, J. P. (2011). Integrative genomics viewer. Nature Biotechnology, 29, 24–26. https://doi.org/10.1038/nbt.1754 Thorvaldsdottir, H., Robinson, J. T., & Mesirov, J. P. (2013). Integrative genomics viewer (IGV): High-performance genomics data visualization and exploration. Briefings in Bioinformatics, 14, 178–192. https://doi.org/10.1093/bib/bbs017 Wortmann, S. B., Zietkiewicz, S., Kousi, M., Szklarczyk, R., Haack, T. B., Gersting, S. W., Muntau, A. C., Rakovic, A., Renkema, G. H., Rodenburg, R. J., Strom, T. M., Meitinger, T., Rubio-Gozalbo, M. E., Chrusciel, E., Distelmaier, F., Golzio, C., Jansen, J. H., van Karnebeek, C., Lillquist, Y., … Wevers, R. A. (2015). CLPB mutations cause 3-methylglutaconic aciduria, progressive brain atrophy, intellectual disability, congenital neutropenia, cataracts, movement disorder. American Journal of Human Genetics, 96, 245–257. https://doi.org/10.1016/j.ajhg.2014.12.013 Wu, D., Liu, Y., Dai, Y., Wang, G., Lu, G., Chen, Y., Li, N., Lin, J., & Gao, N. (2023). Comprehensive structural characterization of the human AAA+ disaggregase CLPB in the apo- and substrate-bound states reveals a unique mode of action driven by oligomerization. PLoS Biology, 21, e3001987. https://doi.org/10.1371/journal.pbio.3001987 Early ViewOnline Version of Record before inclusion in an issue ReferencesRelatedInformation

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