计算机科学
可扩展性
编码(社会科学)
光学(聚焦)
算法
开发(拓扑)
理论计算机科学
功能(生物学)
理想(伦理)
计算科学
分布式计算
程序设计语言
数学
数学分析
统计
物理
进化生物学
光学
生物
哲学
认识论
作者
Peter Eastman,Jason M. Swails,John D. Chodera,Robert T. McGibbon,Yutong Zhao,Kyle A. Beauchamp,Lee‐Ping Wang,Andrew C. Simmonett,Matthew P. Harrigan,Chaya Stern,Rafal Wiewiora,Bernard R. Brooks,Vijay S. Pande
标识
DOI:10.1371/journal.pcbi.1005659
摘要
OpenMM is a molecular dynamics simulation toolkit with a unique focus on extensibility. It allows users to easily add new features, including forces with novel functional forms, new integration algorithms, and new simulation protocols. Those features automatically work on all supported hardware types (including both CPUs and GPUs) and perform well on all of them. In many cases they require minimal coding, just a mathematical description of the desired function. They also require no modification to OpenMM itself and can be distributed independently of OpenMM. This makes it an ideal tool for researchers developing new simulation methods, and also allows those new methods to be immediately available to the larger community.
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