Very Fast Folding and Association of a Trimerization Domain from Bacteriophage T4 Fibritin

三聚体 蛋白质折叠 折叠(DSP实现) 化学 功率因数值分析 结晶学 动力学 联系方式 生物物理学 单体 下坡褶皱 蛋白质结构 生物化学 二聚体 生物 物理 有机化学 量子力学 电气工程 工程类 聚合物
作者
Sarah Güthe,Larisa E. Kapinos,Andreas Möglich,Sebastián Meier,Stephan Grzesiek,Thomas Kiefhaber
出处
期刊:Journal of Molecular Biology [Elsevier BV]
卷期号:337 (4): 905-915 被引量:144
标识
DOI:10.1016/j.jmb.2004.02.020
摘要

The foldon domain constitutes the C-terminal 30 amino acid residues of the trimeric protein fibritin from bacteriophage T4. Its function is to promote folding and trimerization of fibritin. We investigated structure, stability and folding mechanism of the isolated foldon domain. The domain folds into the same trimeric beta-propeller structure as in fibritin and undergoes a two-state unfolding transition from folded trimer to unfolded monomers. The folding kinetics involve several consecutive reactions. Structure formation in the region of the single beta-hairpin of each monomer occurs on the submillisecond timescale. This reaction is followed by two consecutive association steps with rate constants of 1.9(+/-0.5)x10(6)M(-1)s(-1) and 5.4(+/-0.3)x10(6)M(-1)s(-1) at 0.58 M GdmCl, respectively. This is similar to the fastest reported bimolecular association reactions for folding of dimeric proteins. At low concentrations of protein, folding shows apparent third-order kinetics. At high concentrations of protein, the reaction becomes almost independent of protein concentrations with a half-time of about 3 ms, indicating that a first-order folding step from a partially folded trimer to the native protein (k=210 +/- 20 s(-1)) becomes rate-limiting. Our results suggest that all steps on the folding/trimerization pathway of the foldon domain are evolutionarily optimized for rapid and specific initiation of trimer formation during fibritin assembly. The results further show that beta-hairpins allow efficient and rapid protein-protein interactions during folding.
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