可执行文件
计算机科学
工作流程
水准点(测量)
编码(集合论)
分布式计算
程序设计语言
Web服务
源代码
Petri网
用户界面
接口(物质)
软件工程
领域(数学分析)
组分(热力学)
语义学(计算机科学)
业务流程执行语言
动作(物理)
封面(代数)
理论计算机科学
有界函数
Web应用程序
空格(标点符号)
数据库
模型检查
作者
Zehua Zeng,Xuehai Wang,Zhi Luo,Yawen Zheng,Lei Hu,Cencan Xing,Hongwei Du
标识
DOI:10.64898/2026.03.13.711464
摘要
Advances in bulk, single-cell and spatial omics have transformed biological discovery, yet analysis remains fragmented across packages with incompatible interfaces, heterogeneous dependencies and limited workflow reproducibility. Here, we present OmicClaw, an executable natural-language framework for multi-omics analysis built on the unified OmicVerse ecosystem and the J.A.R.V.I.S. runtime. OmicVerse organizes upstream processing, preprocessing, single-cell, spatial, bulk-transcriptomic and foundation-model workflows into a shared AnnData-centered interface spanning more than 100 methods. J.A.R.V.I.S. converts this ecosystem into a bounded analytical action space by exposing more than 200 registered functions and classes through a registry-grounded, state-aware and recoverable execution layer that validates prerequisites, preserves provenance and supports iterative repair. Rather than relying on unconstrained code generation, OmicClaw translates user requests into traceable workflows over live omics objects. Across a benchmark of 15 tasks spanning scRNA-seq, spatial transcriptomics, RNA velocity, scATAC-seq, CITE-seq and multiome analysis, ov.Agent improved rubric-based performance over bare one-shot large language model baselines, particularly for long-horizon multi-step workflows. OmicClaw further supports external agent access through an MCP-compatible server and a beginner-friendly web platform for interactive analysis, code execution and million-scale visualization. Together, OmicClaw provides a practical foundation for reproducible human AI collaboration in modern multi-omics research. OmicClaw is ready to use at https://github.com/Starlitnightly/omicverse
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