Decoding and reconstructing disease relations between dry eye and depression: a multimodal investigation comprising meta-analysis, genetic pathways and Mendelian randomization

孟德尔随机化 全基因组关联研究 遗传建筑学 遗传关联 遗传学 生物 单核苷酸多态性 荟萃分析 转录组 小桶 计算生物学 表型 生物信息学 基因 医学 基因型 基因表达 内科学 遗传变异
作者
Kao-Jung Chang,Hsin-Yu Wu,Pin-Hsuan Chiang,Yu‐Tien Hsu,Pei‐Yu Weng,T. J. Yu,Cheng-Yi Li,Yu‐Hsiang Chen,He-Jhen Dai,Han-Ying Tsai,Yu-Jung Chang,You‐Ren Wu,Yi‐Ping Yang,Cheng‐Ta Li,Chih‐Chien Hsu,Shih‐Jen Chen,Yu‐Chun Chen,Ching‐Yu Cheng,Ai‐Ru Hsieh,Shih‐Hwa Chiou
出处
期刊:Journal of Advanced Research [Elsevier BV]
卷期号:69: 197-213 被引量:12
标识
DOI:10.1016/j.jare.2024.03.015
摘要

INTRODUCTION: The clinical presentations of dry eye disease (DED) and depression (DEP) often comanifest. However, the robustness and the mechanisms underlying this association were undetermined. OBJECTIVES: To this end, we set up a three-segment study that employed multimodality results (meta-analysis, genome-wide association study [GWAS] and Mendelian randomization [MR]) to elucidate the association, common pathways and causality between DED and DEP. METHODS: A meta-analysis comprising 26 case-control studies was first conducted to confirm the DED-DEP association. Next, we performed a linkage disequilibrium (LD)-adjusted GWAS and targeted phenotype association study (PheWAS) in East Asian TW Biobank (TWB) and European UK Biobank (UKB) populations. Single-nucleotide polymorphisms (SNPs) were further screened for molecular interactions and common pathways at the functional gene level. To further elucidate the activated pathways in DED and DEP, a systemic transcriptome review was conducted on RNA sequencing samples from the Gene Expression Omnibus. Finally, 48 MR experiments were implemented to examine the bidirectional causation between DED and DEP. RESULTS: = 0.19) and pleiotropic functional genes contributed to phenotypes in both diseases. Through protein-protein interaction and ontology convergence, we summarized the pleiotropic functional genes under the ontology of immune activation, which was further validated by a transcriptome systemic review. Importantly, the inverse variance-weighted (IVW)-MR experiments in both TWB and UKB populations (p value <0.001) supported the bidirectional exposure-outcome causation for DED-to-DEP and DEP-to-DED. Despite stringent LD-corrected instrumental variable re-selection, the bidirectional causation between DED and DEP remained. CONCLUSION: With the multi-modal evidence combined, we consolidated the association and causation between DED and DEP.
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