德隆
化学
小分子
选择性
限制
蛋白质水解
组合化学
纳米技术
计算生物学
生物化学
材料科学
生物
泛素
基因
工程类
酶
机械工程
泛素连接酶
催化作用
作者
Habib Bouguenina,Andrea Scarpino,Jack A. O’Hanlon,Justin Warne,Hannah Wang,Laura Chan Wah Hak,Amine Sadok,Craig McAndrew,Mark Stubbs,Olivier A. Pierrat,Tamas Hahner,Marc P. Cabry,Yann‐Vaï Le Bihan,Costas Mitsopoulos,Fernando J. Sialana,Theodoros I. Roumeliotis,Rosemary Burke,Rob L. M. van Montfort,Jyoti Kant Choudhari,Rajesh Chopra
出处
期刊:ChemBioChem
[Wiley]
日期:2023-07-07
卷期号:24 (23): e202300351-e202300351
被引量:12
标识
DOI:10.1002/cbic.202300351
摘要
Abstract Small molecules inducing protein degradation are important pharmacological tools to interrogate complex biology and are rapidly translating into clinical agents. However, to fully realise the potential of these molecules, selectivity remains a limiting challenge. Herein, we addressed the issue of selectivity in the design of CRL4 CRBN recruiting PROteolysis TArgeting Chimeras (PROTACs). Thalidomide derivatives used to generate CRL4 CRBN recruiting PROTACs have well described intrinsic monovalent degradation profiles by inducing the recruitment of neo‐substrates, such as GSPT1, Ikaros and Aiolos. We leveraged structural insights from known CRL4 CRBN neo‐substrates to attenuate and indeed remove this monovalent degradation function in well‐known CRL4 CRBN molecular glues degraders, namely CC‐885 and Pomalidomide. We then applied these design principles on a previously published BRD9 PROTAC (dBRD9‐A) and generated an analogue with improved selectivity profile. Finally, we implemented a computational modelling pipeline to show that our degron blocking design does not impact PROTAC‐induced ternary complex formation. We believe that the tools and principles presented in this work will be valuable to support the development of targeted protein degradation.
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