An association between ATP7B expression and human cancer prognosis and immunotherapy: a pan-cancer perspective

微卫星不稳定性 生物 免疫系统 癌症 免疫疗法 癌症免疫疗法 癌症研究 免疫检查点 癌细胞 计算生物学 免疫学 基因 遗传学 微卫星 等位基因
作者
Zhanzhan Zhang,Aobo Zhang,Yunpeng Shi,Zijun Zhao,Zongmao Zhao
出处
期刊:BMC Medical Genomics [BioMed Central]
卷期号:16 (1) 被引量:4
标识
DOI:10.1186/s12920-023-01714-5
摘要

Abstract Background ATP7B is a copper-transporting protein that contributes to the chemo-resistance of human cancer cells. It remains unclear what the molecular mechanisms behind ATP7B are in cancer, as well as its role in human pan-cancer studies. Methods Our study evaluated the differential expression of ATP7B in cancer and paracancerous tissues based on RNA sequencing data from the GTEx and TCGA. Kaplan–Meier and Cox proportional hazards regressions were used to estimate prognostic factors associated with ATP7B.The correlations between the expression of ATP7B and immune cell infiltration, tumor mutation burden, microsatellite instability and immune checkpoint molecules were analyzed. Co-expression networks and mutations in ATP7B were analyzed using the web tools. An analysis of ATP7B expression difference on drug sensitivity on tumor cells was performed using the CTRP, GDSC and CMap database. Results ATP7B expression differed significantly between cancerous and paracancerous tissues. The abnormal expression of ATP7B was linked to prognosis in LGG and KIRC. Infiltration of immune cells, tumor mutation burden, microsatellite instability and immunomodulators had all been linked to certain types of cancer. Cancer cells exhibited a correlation between ATP7B expression and drug sensitivity. Conclusion ATP7B might be an immunotherapeutic and prognostic biomarker based on its involvement in cancer occurrence and development.
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