生物
基因
细胞分化
转录组
基因组
遗传学
基因敲除
电池类型
细胞
计算生物学
细胞生物学
基因表达
作者
Riikka Lund,Maritta Löytömäki,Tiina Naumanen,Craig Dixon,Zhi Chen,Helena Ahlfors,Soile Tuomela,Johanna Tahvanainen,Harry Scheinin,Tiina Henttinen,Omid Rasool,Riitta Lahesmaa
出处
期刊:Journal of Immunology
[The American Association of Immunologists]
日期:2007-03-15
卷期号:178 (6): 3648-3660
被引量:73
标识
DOI:10.4049/jimmunol.178.6.3648
摘要
Th cell subtypes, Th1 and Th2, are involved in the pathogenesis or progression of many immune-mediated diseases, such as type 1 diabetes and asthma, respectively. Defining the molecular networks and factors that direct Th1 and Th2 cell differentiation will help to understand the pathogenic mechanisms causing these diseases. Some of the key factors regulating this differentiation have been identified, however, they alone do not explain the process in detail. To identify novel factors directing the early differentiation, we have studied the transcriptomes of human Th1 and Th2 cells after 2, 6, and 48 h of polarization at the genome scale. Based on our current and previous studies, 288 genes or expressed sequence tags, representing approximately 1-1.5% of the human genome, are regulated in the process during the first 2 days. These transcriptional profiles revealed genes coding for components of certain pathways, such as RAS oncogene family and G protein-coupled receptor signaling, to be differentially regulated during the early Th1 and Th2 cell differentiation. Importantly, numerous novel genes with unknown functions were identified. By using short-hairpin RNA knockdown, we show that a subset of these genes is regulated by IL-4 through STAT6 signaling. Furthermore, we demonstrate that one of the IL-4 regulated genes, NDFIP2, promotes IFN-gamma production by the polarized human Th1 lymphocytes. Among the novel genes identified, there may be many factors that play a crucial role in the regulation of the differentiation process together with the previously known factors and are potential targets for developing therapeutics to modulate Th1 and Th2 responses.
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