细胞外基质
表观遗传学
可塑性
粘弹性
细胞生物学
基质(化学分析)
生物
化学
遗传学
材料科学
复合材料
色谱法
基因
作者
Yifan Wu,Yang Song,Jennifer Soto,Tyler Hoffman,Aaron Zhang,Xiao Han,Zhiwei Fang,Joon Eoh,Luo Gu,Zhen Gu,Song Li
标识
DOI:10.1101/2024.04.14.589442
摘要
Abstract Extracellular matrices of living tissues exhibit viscoelastic properties, yet how these properties regulate chromatin and the epigenome remains unclear. Here, we show that viscoelastic substrates induce changes in nuclear architecture and epigenome, with more pronounced effects on softer surfaces. Fibroblasts on viscoelastic substrates display larger nuclei, lower chromatin compaction, and differential expression of distinct sets of genes related to the cytoskeleton and nuclear function compared to those on purely elastic surfaces. Slow-relaxing viscoelastic substrates reduce lamin A/C expression and enhance nuclear remodeling. These structural changes are accompanied by a global increase in euchromatin marks and local increase in chromatin accessibility at cis-regulatory elements associated with neuronal and pluripotent genes. Consequently, viscoelastic substrates improve the reprogramming efficiency from fibroblasts into neurons and induced pluripotent stem cells. Collectively, our findings unravel the roles of matrix viscoelasticity in epigenetic regulation and cell reprogramming, with implications for designing smart materials for cell fate engineering.
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