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Data harmonization across eight publicly available longitudinal studies of aging, neurodegeneration and dementia

痴呆 神经影像学 概化理论 协调 分类 阿尔茨海默病神经影像学倡议 计算机科学 心理学 医学 人工智能 精神科 发展心理学 疾病 病理 声学 物理
作者
Kevin Kai Wei Low,Elnaz Nourollahimoghadam,Talia M. Nir,Hernan Vargas,Uyen Nguyen,Ankush Shetty,Cally Xiao,Scott Neu,Karen L. Crawford,Sophia I. Thomopoulos,Paul M. Thompson,Lauren E. Salminen,Arthur W. Toga,Ioannis Pappas,Neda Jahanshad
出处
期刊:Alzheimers & Dementia [Wiley]
卷期号:19 (S17)
标识
DOI:10.1002/alz.080494
摘要

Abstract Background Large‐scale multi‐study analyses are required to ensure reproducibility, reliability and generalizability in mapping neurodegeneration and risk for ADRD. However, the heterogeneity in data collection paradigms can complicate and confound data pooling; data harmonization is essential. Longitudinal studies add to the complexity of harmonization as a variety of follow‐up time points and time encoding schemes are used. Here, we pool data from 8 publicly available longitudinal neuroimaging studies on neurodegeneration and dementia to highlight differences in: 1) diagnostic categorization of controls, and people with mild cognitive impairment, and dementia; 2) the extent of follow‐up visits across neuroimaging and clinical assessments; and 3) encodings of various meta‐data elements including scanner manufacturer, sex, and handedness. To allow a systematic approach to multi‐study dementia research, we propose an initial ontological framework for longitudinal data archival and retrieval, capable of capturing similar data elements within given themes while ensuring that unique differences across studies are retained. Method AIBL, ADNI‐1, ADNI2/GO, ADNI‐3, OASIS‐2, OASIS‐3, PREVENT‐AD, and MIRIAD, were accessed. Study designs, inclusion and exclusion criteria, and downloaded data elements were used to describe diagnostic criteria, imaging data, demographic features, and longitudinal data collection schemes. We create common terms to map data elements across studies, and a consistent naming scheme for longitudinal data. Result Figure 1 shows the breakdown of diagnostic labels per cohort, and highlights how different cognitive labels may be assigned to people with the same performance scores, for example, on the Mini Mental State Examination (MMSE). Figure 2 highlights the differences in longitudinal data collection schemes across cohorts, and in labels of commonly collected elements. Using common terms provided an easy way to simultaneously query data across all studies, while retaining a map back to the original terms. Figure 3 showcases our proposed naming scheme for capturing longitudinal data elements using a relational ontological framework. This framework successfully harmonized data across study demographics, timepoints, and imaging properties. Conclusion Multi‐study data analyses are becoming common practice thanks to large scale efforts such as ENIGMA and GAAIN. Harmonization of meta‐data across studies will allow for efficient pooling of data for tracking disease progression and related risk over time.
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