Characterization of the complete mitogenome of Trachylophus sinensis (Coleoptera: Cerambycidae: Cerambycinae), the type species of Trachylophus and its phylogenetic implications

生物 系统发育树 线粒体DNA 进化生物学 单系 姐妹团 系统发育学 动物 克莱德 遗传学 基因
作者
Qiuhong Guo,Liyuan Liu,Weidong Huang,Wen Sang,Xiaosheng Chen,Xingmin Wang
出处
期刊:Journal of Asia-pacific Entomology [Elsevier BV]
卷期号:25 (4): 101977-101977 被引量:6
标识
DOI:10.1016/j.aspen.2022.101977
摘要

• The first complete mitogenome from the genus Trachylophus was determined using next-generation sequencing. • All available mitogenome of Cerambycinae were comparative and analysis to better understand of their mitogenomic evolution patterns. • The phylogenetic relationship of Cerambycinae was explored through all available mitogenome downloaded from GenBank. Complete mitochondrial genomes (mitogenomes) have long been proved as reliable markers for phylogenetic reconstruction among diverse animal groups, especially benefited from recent rapid development of sequencing techniques. However, the mitogenomes of many important clades remain poorly represented, which restricted the understanding of macroscale evolutionary history of these groups. Here, we sequenced and characterized the complete mitogenome of Trachylophus sinensis , a type species of the Trachylophus genus, which also represents the first sequenced mitogenome in this genus. The complete circular mitogenome was 15,746 bp in length, containing 37 typical genes and one noncoding AT-rich control region. The nucleotide composition of the mitogenome was highly A + T biased, accounting for 70.07% of the whole mitogenome with a slightly positive AT skewness (0.106). The 13 Protein coding genes (PCGs) used ATN as their start codons, except nad1 which used TTG. All tRNA genes were predicted with a characteristic cloverleaf secondary structure except trnS1 (AGN) , whose dihydrouridine (DHU) arm was replaced by a simple loop. Phylogenetic analyses recovered Cerambycinae as a monophyletic group with high node supports and the sister relationship between T. sinensis and Nadezhdiella cantori . However, we found that deeper nodes showed not strong support, which may be caused by limited taxa sampling in our study. More mitogenomes should be sequenced representing various taxonomic levels, especially closely related species, which will enhance our understanding of phylogenetic relationships among Cerambycinae.
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