Machine learning driven advances in molecular dynamics of bulk and interfacial aqueous systems

分子动力学 计算机科学 水溶液 图形 机器学习 采样(信号处理) 人工智能 联轴节(管道) 钥匙(锁) 统计物理学 材料科学 生物系统 实验数据 比例(比率) 纳米技术 力场(虚构) 领域(数学) 水模型 多尺度建模 物理系统 复杂系统 化学过程 化学物理 复杂动力学 化学
作者
Ruiyu Wang,Vanessa Meraz,Pratyush Tiwary
出处
期刊:
标识
DOI:10.26434/chemrxiv-2025-6vdl2-v2
摘要

Molecular dynamics (MD) simulations have been widely applied to investigate various physical and chemical processes in aqueous and interfacial environments, which are crucial for the design of energy materials and for understanding several chemical processes at the heart of life itself. However, the applicability of MD simulations has been constrained by several inherent challenges, including the accuracy of force fields, limitations in simulation size and timescales. One promising solution to these challenges is the integration of machine learning (ML) methods, both for improved description of the nature of interactions in aqueous systems as well as for enhanced sampling. In this review, we discuss the principles, implementation, and applications of ML force fields (MLFFs) and ML enhanced sampling methods to the study of aqueous, interfacial systems. We discuss five key categories of applications that use MLFFs, ML-enhanced sampling, and ML-driven data analytics. We first discuss how MLFFs are enabling quantum level accuracy at classical level cost for large scale simulations of complex aqueous and interfacial systems, and then highlight how coupling them with enhanced sampling and advanced data analytics, especially graph based approaches for featurizing such systems, can be used both for enhancing simulations and for understanding them by yielding reliable low dimensional reaction coordinates that improve the interpretation of high dimensional MD data. The discussed applications include investigations into the structure and dynamics of bulk water and aqueous interfaces, proton transfer, catalysis, phase transitions, and the prediction of vibrational spectra. In each case, we highlight how ML-based methods enable simulations that were previously computationally prohibitive and provide new physical insights into aqueous solutions and interfaces. For instance, MLFFs allow nanosecond-scale simulations with thousands of atoms while maintaining quantum chemistry accuracy. Additionally, ML-enhanced sampling facilitates the crossing of large reaction barriers and enables the exploration of extensive configuration spaces. Moreover, ML models trained on simulation data uncover previously overlooked factors, such as the role of solvent dynamics in phase transitions. The combination of MLFFs with enhanced sampling techniques makes the calculation of high-dimensional free energy surfaces feasible, significantly improving our understanding of chemical reactions. Finally, we discuss the current challenges in this field and outline potential future research directions to further advance the integration of ML in MD simulations.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
趁热拿铁完成签到 ,获得积分10
刚刚
by速通发布了新的文献求助10
1秒前
cdercder应助一米多采纳,获得10
1秒前
saber发布了新的文献求助10
1秒前
简单寻冬完成签到 ,获得积分10
2秒前
感性的俊驰完成签到 ,获得积分10
2秒前
Yu完成签到,获得积分10
3秒前
DoD_K发布了新的文献求助10
3秒前
要文献啊完成签到 ,获得积分10
3秒前
3秒前
小胡完成签到,获得积分10
3秒前
3秒前
稳重擎苍完成签到,获得积分10
3秒前
十二应助leilei采纳,获得10
3秒前
一就是好的完成签到,获得积分20
3秒前
大个应助于生有你采纳,获得10
4秒前
李林完成签到,获得积分10
4秒前
DXDPG发布了新的文献求助10
5秒前
Stone完成签到,获得积分10
5秒前
5秒前
6秒前
6秒前
小lu发布了新的文献求助10
7秒前
zcq完成签到 ,获得积分10
7秒前
Costing发布了新的文献求助10
8秒前
水的三次方完成签到 ,获得积分10
8秒前
阿晨发布了新的文献求助10
9秒前
智慧吗喽完成签到,获得积分10
9秒前
HEQ完成签到,获得积分10
10秒前
REBECCA完成签到,获得积分10
10秒前
11秒前
CipherSage应助DoD_K采纳,获得10
11秒前
11秒前
12秒前
DXDPG完成签到,获得积分10
12秒前
13秒前
coco123654完成签到,获得积分10
13秒前
13秒前
saber完成签到,获得积分10
14秒前
彩色的蓝天完成签到,获得积分10
14秒前
高分求助中
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
Principles of town planning: translating concepts to applications 1000
Management and the Arts 510
Matrix Methods in Data Mining and Pattern Recognition Second Edition 510
核安全综合知识2024版 500
Photothermal Science and Techniques 500
Digital Displacement Hydrostatic Transmission for Rotorcraft and Distributed Propulsion 500
热门求助领域 (近24小时)
化学 材料科学 医学 生物 纳米技术 工程类 有机化学 化学工程 生物化学 计算机科学 内科学 物理 复合材料 催化作用 细胞生物学 无机化学 光电子学 物理化学 电极 基因
热门帖子
关注 科研通微信公众号,转发送积分 7711740
求助须知:如何正确求助?哪些是违规求助? 9267981
关于积分的说明 20069583
捐赠科研通 7288419
什么是DOI,文献DOI怎么找? 3297348
关于科研通互助平台的介绍 2451829
邀请新用户注册赠送积分活动 2304374