分子动力学
计算机科学
力场(虚构)
可扩展性
工作流程
可微函数
过程(计算)
领域(数学)
开源
计算科学
模拟
统计物理学
软件
人工智能
化学
物理
计算化学
程序设计语言
数学分析
数学
数据库
纯数学
作者
Xinyan Wang,Jichen Li,Lan Yang,Feiyang Chen,Yingze Wang,Junhan Chang,Junmin Chen,Wei Feng,Linfeng Zhang,Kuang Yu
标识
DOI:10.1021/acs.jctc.2c01297
摘要
In the simulation of molecular systems, the underlying force field (FF) model plays an extremely important role in determining the reliability of the simulation. However, the quality of the state-of-the-art molecular force fields is still unsatisfactory in many cases, and the FF parameterization process largely relies on human experience, which is not scalable. To address this issue, we introduce DMFF, an open-source molecular FF development platform based on an automatic differentiation technique. DMFF serves as a powerful tool for both top-down and bottom-up FF development. Using DMFF, both energies/forces and thermodynamic quantities such as ensemble averages and free energies can be evaluated in a differentiable way, realizing an automatic, yet highly flexible FF optimization workflow. DMFF also eases the evaluation of forces and virial tensors for complicated advanced FFs, helping the fast validation of new models in molecular dynamics simulation. DMFF has been released as an open-source package under the LGPL-3.0 license and is available at https://github.com/deepmodeling/DMFF.
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