Genome‐wide screening diagnostic biomarkers and the construction of prognostic model of hepatocellular carcinoma

肝细胞癌 Lasso(编程语言) 肿瘤科 预测模型 内科学 阶段(地层学) 比例危险模型 医学 计算生物学 总体生存率 生物 计算机科学 古生物学 万维网
作者
Furong Liu,Zhibin Liao,Jia Song,Chaoyi Yuan,Yachong Liu,Hongwei Zhang,Yonglong Pan,Zhanguo Zhang,Bixiang Zhang
出处
期刊:Journal of Cellular Biochemistry [Wiley]
卷期号:121 (3): 2582-2594 被引量:10
标识
DOI:10.1002/jcb.29480
摘要

Abstract Although methods in diagnosis and therapy of hepatocellular carcinoma (HCC) have made significant progress in decades, the overall survival (OS) of HCC remains dissatisfactory, so it is particularly important to find better diagnostic and prognostic biomarkers. In this study, we found a more reliable potential diagnostic biomarkers and constructed a more accurate prognostic evaluation model based on integrated transcriptome sequencing analysis of multiple independent data sets. First, we performed quality evaluation and differential analysis on seven Gene Expression Omnibus (GEO) data sets, and then comprehensively analyzed the differentially expressed genes with a robust rank aggregation algorithm. Next, Least absolute shrinkage and selection operator (LASSO) regression was used to establish an 8‐gene prognostic risk score (RS) model. Finally, the prognostic model was further validated in the GEO data set. Also, RS has independence on other clinicopathological characteristics but has similarities in prognostic assessment compared with the T stage. Moreover, the combination of T stage and prognostic RS model based on the 8‐gene had a better prognostic evaluation effect. In brief, our research suggest that the prognostic risk model of 8 genes has important clinical significance in HCC patients, and can further enrich the prognostic guidance value of the traditional T stage.

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