KRT13-expressing epithelial cell population predicts better response to chemotherapy and immunotherapy in bladder cancer: Comprehensive evidences based on BCa database

免疫疗法 膀胱癌 人口 医学 数据库 肿瘤科 细胞 免疫系统 癌症 癌症研究 生物信息学 内科学 免疫学 生物 计算机科学 环境卫生 遗传学
作者
Donghu Yu,Chen Chen,Le Sun,Shaojie Wu,Xiaoyu Tang,Liye Mei,Cheng Lei,Du Wang,Xinghuan Wang,Liang Cheng,Sheng Li
出处
期刊:Computers in Biology and Medicine [Elsevier BV]
卷期号:158: 106795-106795 被引量:2
标识
DOI:10.1016/j.compbiomed.2023.106795
摘要

Neoadjuvant chemotherapy (NAC) prior to surgery and immune checkpoint therapy (ICT) has revolutionized bladder cancer (BCa) treatment. Patients likely to benefit from these therapies need to be accurately stratified; however, this remains a major clinical challenge. In the present study, single-cell RNA sequencing was used to evaluate the predictive ability of an epithelial cell population highly expressing keratin 13 (KRT13) to assess therapeutic response in BCa. The presence of KRT13-enriched tumors indicated favorable outcomes after NAC and superior response to ICT in patients with BCa. Furthermore, KRT13 population characteristics appeared to be closely related to changes in the immune microenvironment in the vicinity of this cell population. We constructed a prognostic model using an artificial neural network based on the gene signatures in the KRT13 population; the model demonstrated strong robustness and superiority. Additionally, a user-friendly and open-access web application named BCa database was developed for researchers to study BCa by mining the connective map database.
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