OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

Hannes L. Rost, 2, ∗ George Rosenberger, 2, ∗ Pedro Navarro, Ludovic Gillet, Sasa M. Miladinovic, 3 Olga T. Schubert, 2 Witold Wolski, Ben C. Collins, Johan Malmstrom, Lars Malmstrom, and Ruedi Aebersold 6, 7, † Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, CH-8093 Zurich, Switzerland Ph.D. Program in Systems Biology, University of Zurich and ETH Zurich, CH-8057 Zurich, Switzerland Biognosys AG, CH-8952 Schlieren, Switzerland SyBIT project of SystemsX.ch, ETH Zurich, CH-8092 Zurich, Switzerland Department of Immunotechnology, Lund University, S-22100 Lund, Sweden Competence Center for Systems Physiology and Metabolic Diseases, CH-8093 Zurich, Switzerland Faculty of Science, University of Zurich, CH-8057 Zurich, Switzerland (Dated: October 19, 2015)