Bioinformatic Analysis of the Potential Common Pathogenic Mechanisms for Psoriasis and Metabolic Syndrome

银屑病 基因 免疫系统 串扰 生物 计算生物学 遗传学 免疫学 光学 物理
作者
Yang Zhang,Lu Han,Ziting Wang,Runan Fang,Yizao Wan,Zeyu Yang,Ning Guan,Jianhong Li,Qing Ni
出处
期刊:Inflammation [Springer Nature]
卷期号:46 (4): 1381-1395 被引量:3
标识
DOI:10.1007/s10753-023-01815-4
摘要

The pathogeneses of psoriasis and metabolic syndrome are closely related; however, the underlying biological mechanisms are yet to be clarified. A psoriasis training set was downloaded from the Gene Expression Omnibus database and analyzed to identify the differentially expressed genes (|logFC|> 1 and adjust P < 0.05). Differentially expressed genes for metabolic syndrome were obtained from the GeneCards, Online Mendelian Inheritance in Man, and DisGeNET databases, and crosstalk genes were obtained for multiple enrichment analysis after identifying the disease intersection. Characteristic crosstalk genes were screened using the least absolute shrinkage and selection operator regression model and random forest tree model, and the genes with area under the receiver operating characteristic curve > 0.7 were selected for validation by the two validation sets. Differential analyses of immune cell infiltration were performed on psoriasis lesion and control samples using the CIBERSORT and ImmuCellAI methods, and correlation analyses were performed between the screened signature crosstalk genes and immune cell infiltration. Significant crosstalk genes were analyzed based on the psoriasis area and severity index and on the responses to biological agents. We found five signature genes (NLRX1, KYNU, ABCC1, BTC, and SERPINB4) were screened based on two machine learning algorithms, and NLRX1 was validated. The infiltration of multiple immune cells in psoriatic lesions and non-lesions was associated with NLRX1 expression. NLRX1 was found to be associated with psoriasis severity and response rate after the use of biologics. NLRX1 could be a significant crosstalk gene for psoriasis and metabolic syndrome.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
更新
大幅提高文件上传限制,最高150M (2024-4-1)

科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
2秒前
xxzq发布了新的文献求助10
3秒前
1111完成签到,获得积分10
4秒前
Koi完成签到 ,获得积分10
5秒前
大叔完成签到,获得积分10
5秒前
石头发布了新的文献求助10
5秒前
5秒前
琴楼完成签到,获得积分10
5秒前
舒克完成签到,获得积分10
6秒前
阿媛呐发布了新的文献求助30
7秒前
mi发布了新的文献求助10
8秒前
DaLu完成签到,获得积分10
10秒前
16秒前
冯杰完成签到 ,获得积分10
18秒前
水瑟完成签到,获得积分10
20秒前
21秒前
舒克发布了新的文献求助10
21秒前
发论文发发发完成签到,获得积分20
24秒前
26秒前
桐桐应助xz采纳,获得10
26秒前
hwezhu发布了新的文献求助10
33秒前
蠢蠢的死法完成签到,获得积分10
38秒前
38秒前
xixixiHW完成签到 ,获得积分10
42秒前
fjbx发布了新的文献求助10
42秒前
46秒前
48秒前
50秒前
搜集达人应助MOON采纳,获得20
51秒前
秋惜灵发布了新的文献求助10
53秒前
榴莲发布了新的文献求助10
54秒前
wang完成签到,获得积分20
54秒前
925完成签到,获得积分20
54秒前
景代丝发布了新的文献求助10
55秒前
。。完成签到 ,获得积分10
56秒前
马超完成签到 ,获得积分10
58秒前
我真的好饿完成签到 ,获得积分10
1分钟前
从容芮应助型男采纳,获得10
1分钟前
1分钟前
秋惜灵完成签到,获得积分10
1分钟前
高分求助中
Teaching Social and Emotional Learning in Physical Education 900
Plesiosaur extinction cycles; events that mark the beginning, middle and end of the Cretaceous 800
Recherches Ethnographiques sue les Yao dans la Chine du Sud 500
Two-sample Mendelian randomization analysis reveals causal relationships between blood lipids and venous thromboembolism 500
Chinese-English Translation Lexicon Version 3.0 500
Wisdom, Gods and Literature Studies in Assyriology in Honour of W. G. Lambert 400
薩提亞模式團體方案對青年情侶輔導效果之研究 400
热门求助领域 (近24小时)
化学 材料科学 医学 生物 有机化学 工程类 生物化学 纳米技术 物理 内科学 计算机科学 化学工程 复合材料 遗传学 基因 物理化学 催化作用 电极 光电子学 量子力学
热门帖子
关注 科研通微信公众号,转发送积分 2392748
求助须知:如何正确求助?哪些是违规求助? 2097111
关于积分的说明 5284057
捐赠科研通 1824781
什么是DOI,文献DOI怎么找? 910020
版权声明 559943
科研通“疑难数据库(出版商)”最低求助积分说明 486287