Oxidative stress-driven transcriptomic remodeling in human astrocytes reveals network signatures associated with neurodegenerative and cardiovascular processes

蛋白质稳态 生物 转录组 星形胶质细胞 氧化应激 细胞生物学 基因 细胞应激反应 氧化磷酸化 电池类型 DNA损伤 相互作用体 遗传学 蛋白质组学 神经科学 代谢组 生物信息学 拉明 计算生物学 神经退行性变 基因表达 表型 端粒 人脑 基因表达调控 SOD1 β淀粉样蛋白 核板 基因调控网络 信号转导
作者
Patricia M. Bota,Pol Picón-Pagès,Hugo Fanlo-Ucar,Saja Almabhouh,Oriol Bagudanch,Melisa Ece Zeylan,Simge Senyuz,Patrick Gohl,Rubén Molina-Fernández,Narcis Fernandez-Fuentes,Eduard Barbu,Raul Vicente,Stanley Nattel,Ois Angel,Albert Puig‐Pijoan,Jordi Garcia-Ojalvo,Özlem Keskin,Attila Gürsoy,Francisco J. Muñoz,Baldomero Oliva
出处
期刊:Computational and structural biotechnology journal [Elsevier BV]
卷期号:31: 263-275
标识
DOI:10.1016/j.csbj.2025.12.032
摘要

Astrocytes are central to brain homeostasis, supporting neuronal metabolism, synaptic activity, and the blood-brain barrier. With aging, these glial cells undergo molecular and functional changes that weaken support functions and promote neuroinflammation, contributing to neurodegeneration. Yet the systems-level mechanisms by which astrocytes respond to aging-related stressors remain poorly defined in human models. Because aging also heightens risk for cardiovascular disease, cognitive impairment, type 2 diabetes, and systemic inflammation, clarifying shared astrocytic pathways is critical for understanding brain-body crosstalk. Using an in vitro human astrocyte model exposed to sublethal oxidative stress (10 µM H₂O₂) as a proxy for age-related cellular stress, we profiled transcriptomic changes and identified differentially expressed genes across antioxidant defenses, proteostasis, transcriptional regulation, vesicular trafficking, and inflammatory signaling. We then performed network-prioritization analyses on a curated human protein-protein interactome: one seeded with the astrocyte oxidative stress responsive genes and six with phenotype-associated gene sets (Alzheimer's disease, cardiovascular disease, cognitive impairment, type 2 diabetes, oxidative stress, and inflammation). Intersecting the top 5 % scoring genes from each run yielded a 127-gene core shared across all seven, enriched for proteostasis, DNA repair, mitochondrial regulation, and telomere and nuclear envelope maintenance. Structure-guided analyses highlighted vulnerable interfaces, including lamin A/C-lamin B1, α-actinin-filamins, 14-3-3 dimers, and aminoacyl-tRNA synthetase assemblies, where pathogenic variants are predicted to destabilize or aberrantly stabilize protein interactions. Structure-based interface predictions also highlight potential interactions between amyloid precursor protein (APP) and valosin-containing protein (VCP), and between p53 and 14-3-3ζ, potentially linking proteostasis and stress signaling. Together, these analyses identify a conserved astrocyte-centered network signature that may relate neurodegenerative and cardiovascular processes, and prioritize structurally testable candidates for biomarker and intervention hypothesis testing.
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