亲爱的研友该休息了!由于当前在线用户较少,发布求助请尽量完整地填写文献信息,科研通机器人24小时在线,伴您度过漫漫科研夜!身体可是革命的本钱,早点休息,好梦!

Systematic Optimization of a Fragment-Based Force Field against Experimental Pure-Liquid Properties Considering Large Compound Families: Application to Saturated Haloalkanes

力场(虚构) 分子 化学 汽化 化学极性 校准 领域(数学) 计算化学 拓扑(电路) 热力学 物理 数学 量子力学 有机化学 组合数学 纯数学
作者
Marina P. Oliveira,Maurice M. Andrey,Salomé R. Rieder,Leyla Kern,David F. Hahn,Sereina Riniker,Bruno A. C. Horta,Philippe H. Hünenberger
出处
期刊:Journal of Chemical Theory and Computation [American Chemical Society]
卷期号:16 (12): 7525-7555 被引量:26
标识
DOI:10.1021/acs.jctc.0c00683
摘要

Direct optimization against experimental condensed-phase properties concerning small organic molecules still represents the most reliable way to calibrate the empirical parameters of a force field. However, compared to a corresponding calibration against quantum-mechanical (QM) calculations concerning isolated molecules, this approach is typically very tedious and time-consuming. The present article describes an integrated scheme for the automated refinement of force-field parameters against experimental condensed-phase data, considering entire classes of organic molecules constructed using a fragment library via combinatorial isomer enumeration. The main steps of the scheme, referred to as CombiFF, are as follows: (i) definition of a molecule family; (ii) combinatorial enumeration of all isomers; (iii) query for experimental data; (iv) automatic construction of the molecular topologies by fragment assembly; and (v) iterative refinement of the force-field parameters considering the entire family. As a first application, CombiFF is used here to design a GROMOS-compatible united-atom force field for the saturated acyclic haloalkane family. This force field relies on an electronegativity-equalization scheme for the atomic partial charges and involves no specific terms for σ-holes and halogen bonding. A total of 749 experimental liquid densities ρliq and vaporization enthalpies ΔHvap concerning 486 haloalkanes are considered for calibration and validation. The resulting root-mean-square deviations from experiment are 49.8 (27.6) kg·m-3 for ρliq and 2.7 (1.8) kJ·mol-1 for ΔHvap for the calibration (validation) set. The values are lower for the validation set which contains larger molecules (stronger influence of purely aliphatic interactions). The trends in the optimized parameters along the halogen series and across the compound family are in line with chemical intuition based on considerations related to size, polarizability, softness, electronegativity, induction, and hyperconjugation. This observation is particularly remarkable considering that the force-field calibration did not involve any QM calculation. Once the time-consuming task of target-data selection/curation has been performed, the optimization of a force field only takes a few days. As a result, CombiFF enables an easy assessment of the consequences of functional-form decisions on the accuracy of a force field at an optimal level of parametrization.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
更新
PDF的下载单位、IP信息已删除 (2025-6-4)

科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
我亦化身东海去完成签到,获得积分10
3秒前
打打应助我亦化身东海去采纳,获得10
7秒前
pursu发布了新的文献求助10
14秒前
愉快的犀牛完成签到 ,获得积分10
16秒前
Dengjia完成签到,获得积分20
19秒前
Weiyu完成签到 ,获得积分10
37秒前
Criminology34应助科研通管家采纳,获得10
1分钟前
Criminology34应助科研通管家采纳,获得10
1分钟前
Criminology34应助科研通管家采纳,获得10
1分钟前
TXZ06完成签到,获得积分10
2分钟前
kuoping完成签到,获得积分0
2分钟前
五五完成签到 ,获得积分10
3分钟前
3分钟前
共享精神应助科研通管家采纳,获得10
3分钟前
科研通AI2S应助科研通管家采纳,获得10
3分钟前
顺利甜瓜发布了新的文献求助10
3分钟前
鲤鱼山人完成签到 ,获得积分10
3分钟前
顺利甜瓜完成签到,获得积分10
3分钟前
张来完成签到 ,获得积分10
4分钟前
洒脱完成签到,获得积分10
4分钟前
AA完成签到 ,获得积分10
4分钟前
4分钟前
陈宇发布了新的文献求助10
4分钟前
orixero应助陈宇采纳,获得10
5分钟前
陈宇完成签到,获得积分10
5分钟前
duan完成签到 ,获得积分10
5分钟前
点点完成签到 ,获得积分10
5分钟前
科研通AI6应助科研通管家采纳,获得10
5分钟前
7分钟前
7分钟前
杜鑫鹏发布了新的文献求助10
8分钟前
饼干完成签到 ,获得积分10
8分钟前
lin发布了新的文献求助10
8分钟前
飞天大南瓜完成签到,获得积分10
8分钟前
负责以山完成签到 ,获得积分10
8分钟前
震动的忆雪完成签到 ,获得积分10
9分钟前
10分钟前
LHC发布了新的文献求助10
10分钟前
lin发布了新的文献求助10
11分钟前
lin完成签到,获得积分10
11分钟前
高分求助中
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
Bandwidth Choice for Bias Estimators in Dynamic Nonlinear Panel Models 2000
HIGH DYNAMIC RANGE CMOS IMAGE SENSORS FOR LOW LIGHT APPLICATIONS 1500
茶艺师试题库(初级、中级、高级、技师、高级技师) 1000
Constitutional and Administrative Law 1000
The Social Work Ethics Casebook: Cases and Commentary (revised 2nd ed.). Frederic G. Reamer 800
Vertebrate Palaeontology, 5th Edition 530
热门求助领域 (近24小时)
化学 材料科学 医学 生物 工程类 有机化学 生物化学 物理 纳米技术 计算机科学 内科学 化学工程 复合材料 物理化学 基因 遗传学 催化作用 冶金 量子力学 光电子学
热门帖子
关注 科研通微信公众号,转发送积分 5357315
求助须知:如何正确求助?哪些是违规求助? 4488736
关于积分的说明 13972488
捐赠科研通 4389979
什么是DOI,文献DOI怎么找? 2411784
邀请新用户注册赠送积分活动 1404374
关于科研通互助平台的介绍 1378621