Comprehensive bioinformatics analysis revealed potential key genes and pathways underlying abdominal aortic aneurysm

基因 小桶 生物 计算生物学 腹主动脉瘤 候选基因 基因表达 生物信息学 遗传学 转录组 动脉瘤 医学 外科
作者
Kaijie Zhang,Jianing Yue,Li Yin,Jinyi Chen,Yunlu Chen,Lanting Hu,Jian Shen,Naiji Yu,Yunxia Gong,Zhenjie Liu
出处
期刊:Computational and structural biotechnology journal [Elsevier BV]
卷期号:21: 5423-5433 被引量:8
标识
DOI:10.1016/j.csbj.2023.10.052
摘要

Abdominal aortic aneurysm (AAA) is a permanent, asymptomatic segmental dilatation of the abdominal aorta, with a high mortality risk upon rupture. Identification of potential key genes and pathways may help to develop curative drugs for AAA. We conducted RNA-seq on abdominal aortic tissues from both AAA patients and normal individuals as a control group. Integrated bioinformatic analysis was subsequently performed to comprehensively reveal potential key genes and pathways. A total of 1148 differential expressed genes (DEGs) (631 up-regulated and 517 down-regulated) were identified in our study. Gene Ontology (GO) analysis revealed enrichment in terms related to extracellular matrix organization, while KEGG analysis indicated enrichment in hematopoietic cell lineage and ECM-receptor interaction. Protein-protein interaction (PPI) network analysis revealed several candidate key genes, and differential expression of 6 key genes (CXCL8, CCL2, PTGS2, SELL, CCR7, and CXCL1) was validated by Gene Expression Omnibus (GEO) datasets. Receiver operating characteristic curve (ROC) analysis demonstrated these genes' high discriminatory ability between AAA and normal tissues. Immunohistochemistry indicated that several key genes were highly expressed in AAA tissues. Single-cell RNA sequencing revealed differential distribution patterns of these identified key genes among various cell types. 26 potential drugs linked to our key genes were found through DGIdb. Overall, our study provides a comprehensive evaluation of potential key genes and pathways in AAA, which could pave the way for the development of curative pharmacological therapies.
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