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Comprehensive bioinformatics analysis and systems biology approaches to identify the interplay between COVID-19 and pericarditis

心包炎 基因 免疫系统 生物 计算生物学 急性心包炎 基因调控网络 疾病 生物信息学 遗传学 基因表达 医学 病理 内科学
作者
Daisong Li,Ruolan Chen,Chao Huang,Guoliang Zhang,Zhaoqing Li,Xiping Xu,B Wang,Bing Luo,Xiangcheng Chu
出处
期刊:Frontiers in Immunology [Frontiers Media]
卷期号:15
标识
DOI:10.3389/fimmu.2024.1264856
摘要

Background Increasing evidence indicating that coronavirus disease 2019 (COVID-19) increased the incidence and related risks of pericarditis and whether COVID-19 vaccine is related to pericarditis has triggered research and discussion. However, mechanisms behind the link between COVID-19 and pericarditis are still unknown. The objective of this study was to further elucidate the molecular mechanisms of COVID-19 with pericarditis at the gene level using bioinformatics analysis. Methods Genes associated with COVID-19 and pericarditis were collected from databases using limited screening criteria and intersected to identify the common genes of COVID-19 and pericarditis. Subsequently, gene ontology, pathway enrichment, protein–protein interaction, and immune infiltration analyses were conducted. Finally, TF–gene, gene–miRNA, gene–disease, protein–chemical, and protein–drug interaction networks were constructed based on hub gene identification. Results A total of 313 common genes were selected, and enrichment analyses were performed to determine their biological functions and signaling pathways. Eight hub genes ( IL-1β , CD8A , IL-10 , CD4 , IL-6 , TLR4 , CCL2 , and PTPRC ) were identified using the protein–protein interaction network, and immune infiltration analysis was then carried out to examine the functional relationship between the eight hub genes and immune cells as well as changes in immune cells in disease. Transcription factors, miRNAs, diseases, chemicals, and drugs with high correlation with hub genes were predicted using bioinformatics analysis. Conclusions This study revealed a common gene interaction network between COVID-19 and pericarditis. The screened functional pathways, hub genes, potential compounds, and drugs provided new insights for further research on COVID-19 associated with pericarditis.

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