The chromosome-level genome assembly of Fraxinus americana provides insights into the evolution of Oleaceae plants

木犀科 生物 基因组 同步 基因 白蜡树 基因家族 顺序装配 遗传学 基因组大小 植物 非生物胁迫 基因座(遗传学) 转录组 基因表达
作者
Hua Zhang,Zhiqi Li,Maoliang Wang,Yipeng Yang,Yongge Wang,Qiufeng Nie,Fang Liang,Helan Qin,Zhao Zhang
出处
期刊:International Journal of Biological Macromolecules [Elsevier BV]
卷期号:253: 127132-127132 被引量:3
标识
DOI:10.1016/j.ijbiomac.2023.127132
摘要

White ash (Fraxinus americana linn.) originates from the southeastern United States. It is a tall and fast-growing tree species with strong salt-alkali resistance and cold tolerance, making it an important reforestation species and widely planted worldwide. Here, we completed the chromosome-level reference genome assembly of F. americana based on Illumina, PacBio, and Hi-C reads, with a genome size of 878.98 Mb, an N50 of 3.27 Mb, and a heterozygosity rate of 0.3 %. Based on de novo prediction, transcriptome prediction, and homology-based protein prediction, we obtained 39,538 genes. Approximately 843.21 Mb of the assembly genome was composed of 37,928 annotated protein-coding genes, with a gene function annotation rate of 95.93 %. 99.94 % of the overlap clusters (877.44 Mb) were anchored to 23 chromosomes. Synteny analysis of F. americana and other Oleaceae plants showed that F. americana underwent frequent chromosome rearrangements. The amplification of the Ale transposons effectively promoted the genome size of F. americana. Compared with other Oleaceae plants, the Glutathione S-transferase (GST) gene family in the F. americana genome has undergone significant expansion, which may help F. americana cope with adverse natural environments. Furthermore, we found that key enzyme-coding gene families related to lignin biosynthesis were expanded and highly expressed in F. americana leaves. These key genes drive lignin synthesis and benefit F. americana in fast-growing, as well as resisting biotic and abiotic stress. Overall, the F. americana genome assembly provides insights into the evolution of Oleaceae plants and provides abundant resources for breeding and germplasm conservation of white ash.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
1秒前
www完成签到,获得积分10
1秒前
YAN发布了新的文献求助10
2秒前
2秒前
4秒前
星期一完成签到,获得积分10
4秒前
bkagyin的应助被小麦采纳,获得10
5秒前
星辰大海的应助被bbcsyk采纳,获得10
5秒前
6秒前
腼腆的赛君完成签到,获得积分10
7秒前
7秒前
钟D摆完成签到 ,获得积分10
7秒前
三十六完成签到 ,获得积分10
8秒前
10秒前
西哥完成签到,获得积分10
10秒前
科研通AI2S的应助被有野采纳,获得10
10秒前
龙吟发布了新的文献求助30
11秒前
华仔的应助被奋斗的蜗牛采纳,获得10
11秒前
12秒前
Fr1day完成签到,获得积分10
13秒前
予秋发布了新的文献求助10
13秒前
good9完成签到,获得积分10
14秒前
potatoo1984完成签到,获得积分10
14秒前
fx完成签到 ,获得积分10
15秒前
勿念发布了新的文献求助10
15秒前
15秒前
15秒前
阿格完成签到 ,获得积分10
16秒前
16秒前
17秒前
任性新儿完成签到 ,获得积分10
18秒前
vc发布了新的文献求助10
19秒前
19秒前
科研通AI6.2的应助被半江渔火采纳,获得10
20秒前
20秒前
张雯思发布了新的文献求助10
21秒前
bbcsyk发布了新的文献求助10
22秒前
22秒前
feng发布了新的文献求助10
22秒前
外向可冥完成签到,获得积分10
22秒前
高分求助中
(应助此贴封号)通过应助OA文献获取积分 10000
Rosenblum, Global Change Biology 800
Organizational Behavior 510
Arbitrage Theory in Discrete and Continuous Time 500
Production Logging: Theoretical and Interpretive Elements 400
English Longitudinal Study of Ageing: Waves 0-11, 1998-2024 300
2026-2030年中國基因檢測行業市場前瞻與未來投資戰略分析報告 300
热门求助领域 (近24小时)
化学 材料科学 医学 生物 计算机科学 工程类 纳米技术 有机化学 化学工程 内科学 物理 生物化学 复合材料 催化作用 细胞生物学 人工智能 心理学 无机化学 基因 遗传学
热门帖子
关注 科研通微信公众号,转发送积分 7824986
求助须知:如何正确求助?哪些是违规求助? 9351435
关于积分的说明 20561577
捐赠科研通 7418188
什么是DOI,文献DOI怎么找? 3334595
关于科研通互助平台的介绍 2479912
邀请新用户注册赠送积分活动 2354986