The chromosome-level genome assembly of Fraxinus americana provides insights into the evolution of Oleaceae plants

木犀科 生物 基因组 同步 基因 白蜡树 基因家族 顺序装配 遗传学 基因组大小 植物 非生物胁迫 基因座(遗传学) 转录组 基因表达
作者
Hua Zhang,Zhiqi Li,Maoliang Wang,Yongbo Yang,Yongge Wang,Qing Nie,Fang Liang,Helan Qin,Zhao Zhong
出处
期刊:International Journal of Biological Macromolecules [Elsevier]
卷期号:253: 127132-127132
标识
DOI:10.1016/j.ijbiomac.2023.127132
摘要

White ash (Fraxinus americana linn.) originates from the southeastern United States. It is a tall and fast-growing tree species with strong salt-alkali resistance and cold tolerance, making it an important reforestation species and widely planted worldwide. Here, we completed the chromosome-level reference genome assembly of F. americana based on Illumina, PacBio, and Hi-C reads, with a genome size of 878.98 Mb, an N50 of 3.27 Mb, and a heterozygosity rate of 0.3 %. Based on de novo prediction, transcriptome prediction, and homology-based protein prediction, we obtained 39,538 genes. Approximately 843.21 Mb of the assembly genome was composed of 37,928 annotated protein-coding genes, with a gene function annotation rate of 95.93 %. 99.94 % of the overlap clusters (877.44 Mb) were anchored to 23 chromosomes. Synteny analysis of F. americana and other Oleaceae plants showed that F. americana underwent frequent chromosome rearrangements. The amplification of the Ale transposons effectively promoted the genome size of F. americana. Compared with other Oleaceae plants, the Glutathione S-transferase (GST) gene family in the F. americana genome has undergone significant expansion, which may help F. americana cope with adverse natural environments. Furthermore, we found that key enzyme-coding gene families related to lignin biosynthesis were expanded and highly expressed in F. americana leaves. These key genes drive lignin synthesis and benefit F. americana in fast-growing, as well as resisting biotic and abiotic stress. Overall, the F. americana genome assembly provides insights into the evolution of Oleaceae plants and provides abundant resources for breeding and germplasm conservation of white ash.
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