计算机科学
离解(化学)
参数化(大气建模)
水准点(测量)
亚稳态
图形
罕见事件
集合(抽象数据类型)
理论计算机科学
过程(计算)
采样(信号处理)
人工智能
算法
缩小
人工神经网络
数据挖掘
机器学习
作者
Peilin Kang,Jintu Zhang,Enrico Trizio,Tingjun Hou,Michele Parrinello
标识
DOI:10.1021/acs.jctc.5c01848
摘要
The study of rare events is one of the major challenges in atomistic simulations, and several enhanced sampling methods toward its solution have been proposed. Recently, it has been suggested that the use of the committor, which provides a precise formal description of rare events, could be of use in this context. We have recently followed up on this suggestion and proposed a committor-based method that promotes frequent transitions between the metastable states of the system and allows extensive sampling of the process transition state ensemble. One of the strengths of our approach is being self-consistent and semiautomatic, exploiting a variational criterion to iteratively optimize a neural-network-based parametrization of the committor, which uses a set of physical descriptors as input. Here, we further automate this procedure by combining our previous method with the expressive power of graph neural networks, which can directly process atomic coordinates rather than descriptors. Besides applications on benchmark systems, we highlight the advantages of a graph-based approach in describing the role of solvent molecules in systems, such as ion pair dissociation or ligand binding.
科研通智能强力驱动
Strongly Powered by AbleSci AI