PROTAC Cell Permeability and Oral Bioavailability: A Journey Into Uncharted Territory

可药性 图书馆学 医学 化学 万维网 计算机科学 生物化学 基因
作者
Vasanthanathan Poongavanam,Jan Kihlberg
出处
期刊:Future Medicinal Chemistry [Future Science Ltd]
卷期号:14 (3): 123-126 被引量:55
标识
DOI:10.4155/fmc-2021-0208
摘要

Future Medicinal ChemistryVol. 14, No. 3 EditorialPROTAC cell permeability and oral bioavailability: a journey into uncharted territoryVasanthanathan Poongavanam & Jan KihlbergVasanthanathan Poongavanam https://orcid.org/0000-0002-8880-9247Department of Chemistry - BMC, Uppsala University, SE-75123, Uppsala, SwedenSearch for more papers by this author & Jan Kihlberg *Author for correspondence: E-mail Address: jan.kihlberg@kemi.uu.sehttps://orcid.org/0000-0002-4205-6040Department of Chemistry - BMC, Uppsala University, SE-75123, Uppsala, SwedenSearch for more papers by this authorPublished Online:29 Sep 2021https://doi.org/10.4155/fmc-2021-0208AboutSectionsView ArticleView Full TextPDF/EPUB ToolsAdd to favoritesDownload CitationsTrack CitationsPermissionsReprints ShareShare onFacebookTwitterLinkedInReddit View articleKeywords: ADME/Toxdrug designin vitro assaysmolecular chameleonoral druggable spaceReferences1. Edmondson SD, Yang B, Fallan C. Proteolysis targeting chimeras (PROTACs) in ‘beyond rule-of-five’ chemical space: recent progress and future challenges. Bioorg. Med. Chem. Lett. 29, 1555–1564 (2019).Crossref, Medline, CAS, Google Scholar2. Maple HJ, Clayden N, Baron A, Stacey C, Felix R. Developing degraders: principles and perspectives on design and chemical space. Med. Chem. Commun. 10, 1755–1764 (2019).Crossref, CAS, Google Scholar3. Doak BC, Over B, Giordanetto F, Kihlberg J. Oral druggable space beyond the rule of 5: insights from drugs and clinical candidates. Chem. Biol. 21, 1115–1142 (2014).Crossref, Medline, CAS, Google Scholar4. DeGoey DA, Chen H-J, Cox PB, Wendt MD. Beyond the rule of 5: lessons learned from AbbVie's drugs and compound collection. J. Med. Chem. 61, 2636–2651 (2018).Crossref, Medline, CAS, Google Scholar5. Wishart DS, Feunang YD, Guo AC et al. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 46, D1074–D1082 (2018).Crossref, Medline, CAS, Google Scholar6. Weng G, Shen C, Cao D et al. PROTAC-DB: an online database of PROTACs. Nucleic Acids Res. 49(D1), D1381–D1387 (2021).Crossref, Medline, CAS, Google Scholar7. Atilaw Y, Poongavanam V, Svensson Nilsson C et al. Solution conformations shed light on PROTAC cell permeability. ACS Med. Chem. Lett. 12, 107–114 (2021).Crossref, Medline, CAS, Google Scholar8. Danelius E, Poongavanam V, Peintner S, Wieske LHE, Erdélyi M, Kihlberg J. Solution conformations explain the chameleonic behavior of macrocyclic drugs. Chem. Eur. J. 26(23), 5231–5244 (2020).Crossref, Medline, CAS, Google Scholar9. Klein VG, Townsend CE, Testa A et al. Understanding and improving the membrane permeability of VH032-based PROTACs. ACS Med. Chem. Lett. 11(9), 1732–1738 (2020).Crossref, Medline, CAS, Google Scholar10. Pike A, Williamson B, Harlfinger S, Martin S, McGinnity DF. Optimising proteolysis-targeting chimeras (PROTACs) for oral drug delivery: a drug metabolism and pharmacokinetics perspective. Drug Discov. Today 25, 1793-1800 (2020).Crossref, Medline, CAS, Google Scholar11. Cantrill C, Chaturvedi P, Rynn C, Schaffland JP, Walter I, Wittwer MB. Fundamental aspects of DMPK optimization of targeted protein degraders. Drug Discov. Today 25, 969–982 (2020).Crossref, Medline, CAS, Google Scholar12. Ermondi G, Vallaro M, Caron G. Degraders early developability assessment: face-to-face with molecular properties. Drug Discov. Today 25(9), 1585–1591 (2020).Crossref, Medline, CAS, Google Scholar13. Scott DE, Rooney TPC, Bayle ED et al. Systematic investigation of the permeability of androgen receptor PROTACs. ACS Med. Chem. Lett. 11, 1539–1547 (2020).Crossref, Medline, CAS, Google Scholar14. Halford B. Arvinas unveils PROTAC structures. Chem. Eng. News 99(14), magazine/99/09914 (2021).Google Scholar15. Sun X, Wang J, Yao X et al. A chemical approach for global protein knockdown from mice to non-human primates. Cell Discov. 5, 10 (2019).Crossref, Medline, Google Scholar16. Tinworth CP, Lithgow H, Dittus L et al. PROTAC-mediated degradation of Bruton's tyrosine kinase is inhibited by covalent binding. ACS Chem. Biol. 14, 342–347 (2019).Crossref, Medline, CAS, Google Scholar17. Poongavanam V, Danelius E, Peintner S et al. Conformational sampling of macrocyclic drugs in different environments – can we find the relevant conformations? ACS Omega 3, 11742–11757 (2018).Crossref, Medline, CAS, Google Scholar18. Poongavanam V, Atilaw Y, Ye S et al. Predicting the permeability of macrocycles from conformational sampling – limitations of molecular flexibility. J. Pharm. Sci. 110, 301–313 (2021).Crossref, Medline, CAS, Google Scholar19. Goracci L, Desantis J, Valeri A, Castellani B, Eleuteri M, Cruciani G. Understanding the metabolism of proteolysis targeting chimeras (PROTACs): the next step toward pharmaceutical applications. J. Med. Chem. 63, 11615–11638 (2020).Crossref, Medline, CAS, Google Scholar20. Bemis TA, La Clair JJ, Burkart MD. Unraveling the role of linker design in proteolysis targeting chimeras. J. Med. Chem. 64, 8042–8052 (2021).Crossref, Medline, CAS, Google ScholarFiguresReferencesRelatedDetailsCited ByDesign, synthesis and bioactivity evaluation of self-assembled PROTACs based on multi-target kinase inhibitorsBioorganic Chemistry, Vol. 134Trends in Molecular Properties, Bioavailability, and Permeability across the Bayer Compound Collection8 February 2023 | Journal of Medicinal Chemistry, Vol. 66, No. 4Predictive Modeling of PROTAC Cell Permeability with Machine Learning1 February 2023 | ACS Omega, Vol. 8, No. 6Natural product-based PROteolysis TArgeting Chimeras (PROTACs)1 January 2022 | Natural Product Reports, Vol. 39, No. 12Linker-Dependent Folding Rationalizes PROTAC Cell Permeability28 September 2022 | Journal of Medicinal Chemistry, Vol. 65, No. 19Strategies for the discovery of oral PROTAC degraders aimed at cancer therapyCell Reports Physical Science, Vol. 3, No. 10The current state of the art and future trends in RAS-targeted cancer therapies26 August 2022 | Nature Reviews Clinical Oncology, Vol. 19, No. 10PROTACs: Current Trends in Protein Degradation by Proteolysis-Targeting Chimeras13 September 2022 | BioDrugs, Vol. 36, No. 5Non-small molecule PROTACs (NSM-PROTACs): Protein degradation kaleidoscopeActa Pharmaceutica Sinica B, Vol. 12, No. 7PROTAC targeted protein degraders: the past is prologue18 January 2022 | Nature Reviews Drug Discovery, Vol. 21, No. 3Hearing loss drug discovery and medicinal chemistry: Current status, challenges, and opportunities Vol. 14, No. 3 Follow us on social media for the latest updates Metrics Downloaded 1,804 times History Received 17 July 2021 Accepted 1 September 2021 Published online 29 September 2021 Published in print February 2022 Information© 2021 Newlands PressKeywordsADME/Toxdrug designin vitro assaysmolecular chameleonoral druggable spaceFinancial & competing interests disclosureThe authors have no relevant affiliations or financial involvement with any organization or entity with a financial interest in or financial conflict with the subject matter or materials discussed in the manuscript. This includes employment, consultancies, honoraria, stock ownership or options, expert testimony, grants or patents received or pending or royalties.No writing assistance was utilized in the production of this manuscript.PDF download
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
班尼肥鸭发布了新的文献求助10
1秒前
kiwi完成签到,获得积分10
1秒前
zhzzhz完成签到,获得积分10
1秒前
墨月完成签到,获得积分10
1秒前
飞天小女警完成签到,获得积分10
1秒前
阿龙完成签到,获得积分10
1秒前
迹K完成签到,获得积分10
2秒前
2秒前
小鱼要变咸完成签到,获得积分10
2秒前
坚强幻露完成签到 ,获得积分10
3秒前
凌晨一点的莱茵猫完成签到,获得积分10
3秒前
学术牛马完成签到,获得积分10
3秒前
wythu16完成签到,获得积分10
3秒前
Designer发布了新的文献求助10
3秒前
4秒前
as发布了新的文献求助10
4秒前
阔达的琦完成签到 ,获得积分10
4秒前
整齐的泥猴桃完成签到 ,获得积分10
4秒前
李宗洋完成签到,获得积分10
4秒前
慧慧完成签到,获得积分10
4秒前
大模型应助海棠听风采纳,获得10
4秒前
dffh发布了新的文献求助200
5秒前
生动初蓝完成签到,获得积分10
5秒前
勤奋的安梦完成签到,获得积分10
6秒前
zZZ发布了新的文献求助10
6秒前
蒋豆豆发布了新的文献求助10
6秒前
zz发布了新的文献求助10
6秒前
maoke完成签到 ,获得积分10
6秒前
忧郁的白风完成签到,获得积分10
7秒前
初青酱完成签到,获得积分10
7秒前
weinaonao完成签到,获得积分10
7秒前
7秒前
8秒前
威菡关注了科研通微信公众号
8秒前
8秒前
SHUAI发布了新的文献求助10
8秒前
居居子完成签到,获得积分10
8秒前
loas完成签到,获得积分10
9秒前
橙子一直跑完成签到 ,获得积分10
9秒前
qwq发布了新的社区帖子
9秒前
高分求助中
Principles of Economics, 11th Edition 10000
Prescott's Microbiology: 2026 Release ISE 10000
University Physics with Modern Physics, 16th edition 10000
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
Environmental Leverage in Times of Climate Crisis: Product Standards, Carbon Border Measures and Preferential Trade Agreements 1000
Erwählung und Berufung bei Paulus: Bedeutung, Entwicklung und Funktion einer Vorstellung in ihrem frühjüdischen und griechisch-römischen Kontext 850
Matrix Methods in Data Mining and Pattern Recognition 510
热门求助领域 (近24小时)
化学 材料科学 医学 生物 纳米技术 工程类 有机化学 化学工程 生物化学 计算机科学 内科学 物理 复合材料 催化作用 细胞生物学 无机化学 光电子学 物理化学 电极 基因
热门帖子
关注 科研通微信公众号,转发送积分 7205577
求助须知:如何正确求助?哪些是违规求助? 8839166
关于积分的说明 18653713
捐赠科研通 6853562
什么是DOI,文献DOI怎么找? 3180664
关于科研通互助平台的介绍 2339455
邀请新用户注册赠送积分活动 2155039