PROTAC cell permeability and oral bioavailability: a journey into uncharted territory

可药性 图书馆学 医学 化学 万维网 计算机科学 生物化学 基因
作者
Vasanthanathan Poongavanam,Jan Kihlberg
出处
期刊:Future Medicinal Chemistry [Newlands Press Ltd]
卷期号:14 (3): 123-126 被引量:23
标识
DOI:10.4155/fmc-2021-0208
摘要

Future Medicinal ChemistryVol. 14, No. 3 EditorialPROTAC cell permeability and oral bioavailability: a journey into uncharted territoryVasanthanathan Poongavanam & Jan KihlbergVasanthanathan Poongavanam https://orcid.org/0000-0002-8880-9247Department of Chemistry - BMC, Uppsala University, SE-75123, Uppsala, SwedenSearch for more papers by this author & Jan Kihlberg *Author for correspondence: E-mail Address: jan.kihlberg@kemi.uu.sehttps://orcid.org/0000-0002-4205-6040Department of Chemistry - BMC, Uppsala University, SE-75123, Uppsala, SwedenSearch for more papers by this authorPublished Online:29 Sep 2021https://doi.org/10.4155/fmc-2021-0208AboutSectionsView ArticleView Full TextPDF/EPUB ToolsAdd to favoritesDownload CitationsTrack CitationsPermissionsReprints ShareShare onFacebookTwitterLinkedInReddit View articleKeywords: ADME/Toxdrug designin vitro assaysmolecular chameleonoral druggable spaceReferences1. Edmondson SD, Yang B, Fallan C. Proteolysis targeting chimeras (PROTACs) in ‘beyond rule-of-five’ chemical space: recent progress and future challenges. Bioorg. Med. Chem. Lett. 29, 1555–1564 (2019).Crossref, Medline, CAS, Google Scholar2. Maple HJ, Clayden N, Baron A, Stacey C, Felix R. Developing degraders: principles and perspectives on design and chemical space. Med. Chem. Commun. 10, 1755–1764 (2019).Crossref, CAS, Google Scholar3. Doak BC, Over B, Giordanetto F, Kihlberg J. Oral druggable space beyond the rule of 5: insights from drugs and clinical candidates. Chem. Biol. 21, 1115–1142 (2014).Crossref, Medline, CAS, Google Scholar4. DeGoey DA, Chen H-J, Cox PB, Wendt MD. Beyond the rule of 5: lessons learned from AbbVie's drugs and compound collection. J. Med. Chem. 61, 2636–2651 (2018).Crossref, Medline, CAS, Google Scholar5. Wishart DS, Feunang YD, Guo AC et al. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 46, D1074–D1082 (2018).Crossref, Medline, CAS, Google Scholar6. Weng G, Shen C, Cao D et al. PROTAC-DB: an online database of PROTACs. Nucleic Acids Res. 49(D1), D1381–D1387 (2021).Crossref, Medline, CAS, Google Scholar7. Atilaw Y, Poongavanam V, Svensson Nilsson C et al. Solution conformations shed light on PROTAC cell permeability. ACS Med. Chem. Lett. 12, 107–114 (2021).Crossref, Medline, CAS, Google Scholar8. Danelius E, Poongavanam V, Peintner S, Wieske LHE, Erdélyi M, Kihlberg J. Solution conformations explain the chameleonic behavior of macrocyclic drugs. Chem. Eur. J. 26(23), 5231–5244 (2020).Crossref, Medline, CAS, Google Scholar9. Klein VG, Townsend CE, Testa A et al. Understanding and improving the membrane permeability of VH032-based PROTACs. ACS Med. Chem. Lett. 11(9), 1732–1738 (2020).Crossref, Medline, CAS, Google Scholar10. Pike A, Williamson B, Harlfinger S, Martin S, McGinnity DF. Optimising proteolysis-targeting chimeras (PROTACs) for oral drug delivery: a drug metabolism and pharmacokinetics perspective. Drug Discov. Today 25, 1793-1800 (2020).Crossref, Medline, CAS, Google Scholar11. Cantrill C, Chaturvedi P, Rynn C, Schaffland JP, Walter I, Wittwer MB. Fundamental aspects of DMPK optimization of targeted protein degraders. Drug Discov. Today 25, 969–982 (2020).Crossref, Medline, CAS, Google Scholar12. Ermondi G, Vallaro M, Caron G. Degraders early developability assessment: face-to-face with molecular properties. Drug Discov. Today 25(9), 1585–1591 (2020).Crossref, Medline, CAS, Google Scholar13. Scott DE, Rooney TPC, Bayle ED et al. Systematic investigation of the permeability of androgen receptor PROTACs. ACS Med. Chem. Lett. 11, 1539–1547 (2020).Crossref, Medline, CAS, Google Scholar14. Halford B. Arvinas unveils PROTAC structures. Chem. Eng. News 99(14), magazine/99/09914 (2021).Google Scholar15. Sun X, Wang J, Yao X et al. A chemical approach for global protein knockdown from mice to non-human primates. Cell Discov. 5, 10 (2019).Crossref, Medline, Google Scholar16. Tinworth CP, Lithgow H, Dittus L et al. PROTAC-mediated degradation of Bruton's tyrosine kinase is inhibited by covalent binding. ACS Chem. Biol. 14, 342–347 (2019).Crossref, Medline, CAS, Google Scholar17. Poongavanam V, Danelius E, Peintner S et al. Conformational sampling of macrocyclic drugs in different environments – can we find the relevant conformations? ACS Omega 3, 11742–11757 (2018).Crossref, Medline, CAS, Google Scholar18. Poongavanam V, Atilaw Y, Ye S et al. Predicting the permeability of macrocycles from conformational sampling – limitations of molecular flexibility. J. Pharm. Sci. 110, 301–313 (2021).Crossref, Medline, CAS, Google Scholar19. Goracci L, Desantis J, Valeri A, Castellani B, Eleuteri M, Cruciani G. Understanding the metabolism of proteolysis targeting chimeras (PROTACs): the next step toward pharmaceutical applications. J. Med. Chem. 63, 11615–11638 (2020).Crossref, Medline, CAS, Google Scholar20. Bemis TA, La Clair JJ, Burkart MD. Unraveling the role of linker design in proteolysis targeting chimeras. J. Med. Chem. 64, 8042–8052 (2021).Crossref, Medline, CAS, Google ScholarFiguresReferencesRelatedDetailsCited ByDesign, synthesis and bioactivity evaluation of self-assembled PROTACs based on multi-target kinase inhibitorsBioorganic Chemistry, Vol. 134Trends in Molecular Properties, Bioavailability, and Permeability across the Bayer Compound Collection8 February 2023 | Journal of Medicinal Chemistry, Vol. 66, No. 4Predictive Modeling of PROTAC Cell Permeability with Machine Learning1 February 2023 | ACS Omega, Vol. 8, No. 6Natural product-based PROteolysis TArgeting Chimeras (PROTACs)1 January 2022 | Natural Product Reports, Vol. 39, No. 12Linker-Dependent Folding Rationalizes PROTAC Cell Permeability28 September 2022 | Journal of Medicinal Chemistry, Vol. 65, No. 19Strategies for the discovery of oral PROTAC degraders aimed at cancer therapyCell Reports Physical Science, Vol. 3, No. 10The current state of the art and future trends in RAS-targeted cancer therapies26 August 2022 | Nature Reviews Clinical Oncology, Vol. 19, No. 10PROTACs: Current Trends in Protein Degradation by Proteolysis-Targeting Chimeras13 September 2022 | BioDrugs, Vol. 36, No. 5Non-small molecule PROTACs (NSM-PROTACs): Protein degradation kaleidoscopeActa Pharmaceutica Sinica B, Vol. 12, No. 7PROTAC targeted protein degraders: the past is prologue18 January 2022 | Nature Reviews Drug Discovery, Vol. 21, No. 3Hearing loss drug discovery and medicinal chemistry: Current status, challenges, and opportunities Vol. 14, No. 3 Follow us on social media for the latest updates Metrics Downloaded 1,804 times History Received 17 July 2021 Accepted 1 September 2021 Published online 29 September 2021 Published in print February 2022 Information© 2021 Newlands PressKeywordsADME/Toxdrug designin vitro assaysmolecular chameleonoral druggable spaceFinancial & competing interests disclosureThe authors have no relevant affiliations or financial involvement with any organization or entity with a financial interest in or financial conflict with the subject matter or materials discussed in the manuscript. This includes employment, consultancies, honoraria, stock ownership or options, expert testimony, grants or patents received or pending or royalties.No writing assistance was utilized in the production of this manuscript.PDF download
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
更新
大幅提高文件上传限制,最高150M (2024-4-1)

科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
CipherSage应助余尘采纳,获得10
2秒前
3秒前
4秒前
秋雪瑶应助专注背包采纳,获得10
5秒前
大东东发布了新的文献求助10
5秒前
大模型应助俭朴的猫咪采纳,获得10
9秒前
研友_VZG7GZ应助俭朴的猫咪采纳,获得10
9秒前
余尘完成签到,获得积分10
10秒前
10秒前
科研搬运工完成签到,获得积分10
12秒前
12秒前
nnnnnn完成签到,获得积分20
13秒前
苏夏完成签到,获得积分10
14秒前
15秒前
大东东完成签到,获得积分10
15秒前
小圆圆发布了新的文献求助10
16秒前
精明的翠彤关注了科研通微信公众号
16秒前
Chem34发布了新的文献求助10
17秒前
专注背包发布了新的文献求助10
20秒前
追寻的依柔完成签到 ,获得积分10
20秒前
mhlu7发布了新的文献求助10
21秒前
十八冠六完成签到 ,获得积分20
21秒前
28秒前
AKKKK发布了新的文献求助10
28秒前
纯情女大完成签到 ,获得积分10
31秒前
淳于冬卉发布了新的文献求助10
31秒前
33秒前
34秒前
36秒前
38秒前
39秒前
39秒前
今后应助王献杰采纳,获得10
39秒前
今后应助tianya采纳,获得10
40秒前
doctor fighting完成签到,获得积分10
41秒前
Zhao发布了新的文献求助10
44秒前
回忆告白完成签到,获得积分10
45秒前
谦让路灯发布了新的文献求助10
45秒前
智博36完成签到,获得积分10
45秒前
46秒前
高分求助中
The three stars each: the Astrolabes and related texts 1100
Sport in der Antike 800
De arte gymnastica. The art of gymnastics 600
Berns Ziesemer - Maos deutscher Topagent: Wie China die Bundesrepublik eroberte 500
Stephen R. Mackinnon - Chen Hansheng: China’s Last Romantic Revolutionary (2023) 500
Sport in der Antike Hardcover – March 1, 2015 500
Psychological Warfare Operations at Lower Echelons in the Eighth Army, July 1952 – July 1953 400
热门求助领域 (近24小时)
化学 材料科学 医学 生物 有机化学 工程类 生物化学 纳米技术 物理 内科学 计算机科学 化学工程 复合材料 遗传学 基因 物理化学 催化作用 电极 光电子学 量子力学
热门帖子
关注 科研通微信公众号,转发送积分 2429734
求助须知:如何正确求助?哪些是违规求助? 2114383
关于积分的说明 5361331
捐赠科研通 1842256
什么是DOI,文献DOI怎么找? 916893
版权声明 561496
科研通“疑难数据库(出版商)”最低求助积分说明 490478