门控
配体(生物化学)
化学
单加氧酶
细胞色素P450
立体化学
螺旋(腹足类)
血红素
细胞色素
生物物理学
分子动力学
能源景观
机制(生物学)
酶
职位(财务)
构象变化
身份(音乐)
蛋白质结构
Kir6.2
结晶学
干扰(通信)
甲烷单加氧酶
活动站点
生物化学
计算生物学
构象集合
侧链
酶催化
摘要
, the distance from the FG-loop Cα centroid to the heme Fe that reports the cover position over the distal pocket. These descriptors are complemented by reactive-geometry and hydrogen-bond analyses and by MM-PBSA component analysis as a supportive energetic readout. The simulations reveal a conserved mouth-cover landscape with three recurrent basins, open, intermediate, and closed. Ligands mainly redistribute populations across these pre-existing states and reshape gate geometry rather than generating new conformational states. Together, these findings support a conformational-selection mechanism linking ligand recognition, gating, and catalytic readiness in this orphan bacterial P450.
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