Comparison of methods for finding saddle points without knowledge of the final states

鞍点 自由度(物理和化学) 马鞍 特征向量 势能面 功能(生物学) Lanczos重采样 数学 成对比较 过渡态理论 物理 统计物理学 数学分析 量子力学 几何学 数学优化 从头算 统计 动力学 反应速率常数 生物 进化生物学
作者
R. A. Olsen,Geert–Jan Kroes,Graeme Henkelman,Andri Arnaldsson,Hannes Jónsson
出处
期刊:Journal of Chemical Physics [American Institute of Physics]
卷期号:121 (20): 9776-9792 被引量:554
标识
DOI:10.1063/1.1809574
摘要

Within the harmonic approximation to transition state theory, the biggest challenge involved in finding the mechanism or rate of transitions is the location of the relevant saddle points on the multidimensional potential energy surface. The saddle point search is particularly challenging when the final state of the transition is not specified. In this article we report on a comparison of several methods for locating saddle points under these conditions and compare, in particular, the well-established rational function optimization (RFO) methods using either exact or approximate Hessians with the more recently proposed minimum mode following methods where only the minimum eigenvalue mode is found, either by the dimer or the Lanczos method. A test problem involving transitions in a seven-atom Pt island on a Pt(111) surface using a simple Morse pairwise potential function is used and the number of degrees of freedom varied by varying the number of movable atoms. In the full system, 175 atoms can move so 525 degrees of freedom need to be optimized to find the saddle points. For testing purposes, we have also restricted the number of movable atoms to 7 and 1. Our results indicate that if attempting to make a map of all relevant saddle points for a large system (as would be necessary when simulating the long time scale evolution of a thermal system) the minimum mode following methods are preferred. The minimum mode following methods are also more efficient when searching for the lowest saddle points in a large system, and if the force can be obtained cheaply. However, if only the lowest saddle points are sought and the calculation of the force is expensive but a good approximation for the Hessian at the starting position of the search can be obtained at low cost, then the RFO approaches employing an approximate Hessian represent the preferred choice. For small and medium sized systems where the force is expensive to calculate, the RFO approaches employing an approximate Hessian is also the more efficient, but when the force and Hessian can be obtained cheaply and only the lowest saddle points are sought the RFO approach using an exact Hessian is the better choice. These conclusions have been reached based on a comparison of the total computational effort needed to find the saddle points and the number of saddle points found for each of the methods. The RFO methods do not perform very well with respect to the latter aspect, but starting the searches further away from the initial minimum or using the hybrid RFO version presented here improves this behavior considerably in most cases.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
刚刚
小c发布了新的文献求助10
刚刚
2052669099应助生煎包采纳,获得30
1秒前
嘉心糖发布了新的文献求助30
1秒前
2秒前
langlang完成签到,获得积分10
2秒前
无花果应助DearHermione采纳,获得10
2秒前
2秒前
清新的寻菡完成签到 ,获得积分10
2秒前
万能图书馆应助BPATIENT采纳,获得10
2秒前
威武的戎完成签到,获得积分10
3秒前
youchen完成签到,获得积分10
3秒前
3秒前
3秒前
3秒前
3秒前
愉快怀绿完成签到,获得积分10
3秒前
4秒前
4秒前
4秒前
微笑孤丹应助immune采纳,获得10
4秒前
Muzi完成签到 ,获得积分20
5秒前
完美世界应助hoax采纳,获得10
5秒前
zjl完成签到 ,获得积分10
5秒前
威武的戎发布了新的文献求助10
6秒前
李健应助爱低温的啊陈采纳,获得10
6秒前
斯文败类应助慢慢采纳,获得10
6秒前
qiuling完成签到,获得积分10
6秒前
威康宇宙发布了新的文献求助10
6秒前
6秒前
6秒前
阳阳秋发布了新的文献求助10
7秒前
Barry发布了新的文献求助10
7秒前
魏嘉轩发布了新的文献求助10
7秒前
Owen应助小曹君采纳,获得10
7秒前
情怀应助汤圆软软软采纳,获得10
7秒前
7秒前
8秒前
隐形曼青应助汤圆软软软采纳,获得10
8秒前
Hachi爸爸完成签到,获得积分20
8秒前
高分求助中
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
Principles of town planning: translating concepts to applications 1000
1 Peter and Christ's Descent to the Dead in Its Early Christian Reception 700
Perfectionism in School 600
Organizational Behavior 510
Management and the Arts 510
Matrix Methods in Data Mining and Pattern Recognition Second Edition 510
热门求助领域 (近24小时)
化学 材料科学 医学 生物 纳米技术 工程类 有机化学 化学工程 生物化学 计算机科学 内科学 物理 复合材料 催化作用 细胞生物学 无机化学 光电子学 物理化学 电极 基因
热门帖子
关注 科研通微信公众号,转发送积分 7729105
求助须知:如何正确求助?哪些是违规求助? 9281254
关于积分的说明 20141887
捐赠科研通 7306506
什么是DOI,文献DOI怎么找? 3302994
关于科研通互助平台的介绍 2456029
邀请新用户注册赠送积分活动 2311265