In order to improve treatment efficacy and minimize systemic adverse effects, the present effort sought to create and assess aptamer-functionalized polymeric nanoparticles (AF-PNPs) for the targeted delivery of antidepressant medications to the brain. To create PLGA nanoparticles encasing the model antidepressant fluoxetine, the nanoprecipitation approach was used. Afterwards, nucleolin-specific aptamers were added to the nanoparticles by the use of carbodiimide chemistry. The improved mixture displayed a zeta potential of -26.7 ± 1.5 mV, a polydispersity index of 0.182 ± 0.02 and an average particle size of 142.6 ± 3.8 nm. The drug loading and drug encapsulation efficiency were measured at 12.3 ± 1.1% and 78.5 ± 2.4%, respectively. Experiments with in vitro release showed a biphasic pattern, with a 23% burst after 6 hours and a sustained release of up to 84% over 72 hours. In comparison to non-functionalized nanoparticles, aptamer conjugation increased cellular uptake in SH-SY5Y neuroblastoma cells by a factor of 2.3 (p < 0.01). Hemolysis tests proved hemocompatibility with a hemolysis rate of less than 2%. The brain accumulation of AF-PNPs was substantially higher (3.4 ± 0.6% ID/g tissue) four hours after injection in Wistar rats compared to non-functionalized PNPs (1.2 ± 0.3% ID/g tissue) and free drug (0.7 ± 0.2% ID/g tissue) (p < 0.001). AF-PNPs lowered immobility time by 48%, non-functionalized PNPs by 29%, and free medication by 18%, according to pharmacodynamic evaluation using the forced swim test. In order to improve treatment outcomes, decrease systemic toxicity, and increase bioavailability, the results show that aptamer-functionalized polymeric nanoparticles offer a practical and effective platform for targeted delivery of antidepressants to the brain.