OBJECTIVE To determine the contents of indigo and indirubin in Indigo Naturalis.METHODS The contents of indigo and indirubin were determined by HPLC.The chromatographic column was DiamonsilTM C18(250 mm×4.6 mm,5 μm).The mobile phase was methanol-water(80:20).The flow rate was 1.0 ml·min-1 with detection wavelngth of 287 nm for indigo and 292 nm for indirubin.RESULTS The linear correlation of the indigo was good in the range of 0.07-0.52 μg and the recovery was 100.9% with RSD of 1.42%(n=6).The Linear correlation of the indirubin was good in the range of 0.02-0.20 μg and the recovery was 101.3% with RSD of 1.87%(n=6)。CONCLUSION The method can be applied to determine the contents of indigo and indirubin in Indigo Naturalis.It can ensure the stability of the quality control of Indigo Naturalis.