硝化作用
生物
土壤盐分
古细菌
利基
土壤微生物学
稳定同位素探测
环境化学
生态学
盐度
生态位分化
土壤水分
生态位
非生物成分
铵
氨单加氧酶
化学
细菌
氮气
微生物
有机化学
遗传学
作者
Xiangxin Sun,Jun Zhao,Xue Zhou,Qicheng Bei,Weiwei Xia,Bingzi Zhao,Jiabao Zhang,Zhongjun Jia
出处
期刊:The ISME Journal
[Springer Nature]
日期:2021-08-13
卷期号:16 (2): 412-422
被引量:5
标识
DOI:10.1038/s41396-021-01079-6
摘要
Ammonia oxidizers are key players in the global nitrogen cycle, yet little is known about their ecological performances and adaptation strategies for growth in saline terrestrial ecosystems. This study combined 13C-DNA stable-isotope probing (SIP) microcosms with amplicon and shotgun sequencing to reveal the composition and genomic adaptations of active ammonia oxidizers in a saline-sodic (solonetz) soil with high salinity and pH (20.9 cmolc exchangeable Na+ kg-1 soil and pH 9.64). Both ammonia-oxidizing archaea (AOA) and bacteria (AOB) exhibited strong nitrification activities, although AOB performed most of the ammonia oxidation observed in the solonetz soil and in the farmland soil converted from solonetz soil. Members of the Nitrosococcus, which are more often associated with aquatic habitats, were identified as the dominant ammonia oxidizers in the solonetz soil with the first direct labeling evidence, while members of the Nitrosospira were the dominant ammonia oxidizers in the farmland soil, which had much lower salinity and pH. Metagenomic analysis of Candidatus Nitrosococcus sp. Sol14, a new species within the Nitrosococcus lineage, revealed multiple genomic adaptations predicted to facilitate osmotic and pH homeostasis in this extreme habitat, including direct Na+ extrusion/H+ import and the ability to increase intracellular osmotic pressure by accumulating compatible solutes. Comparative genomic analysis revealed that variation in salt-tolerance mechanisms was the primary driver for the niche differentiation of ammonia oxidizers in saline-sodic soils. These results demonstrate how ammonia oxidizers can adapt to saline-sodic soil with excessive Na+ content and provide new insights on the nitrogen cycle in extreme terrestrial ecosystems.
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