聚合物
垂直的
构象熵
化学物理
材料科学
链条(单位)
接口(物质)
熵(时间箭头)
生物系统
纳米技术
分子
化学
物理
热力学
几何学
复合材料
吉布斯等温线
数学
有机化学
天文
生物
作者
Jiahui Wang,Dinesh Sundaravadivelu Devarajan,Arash Nikoubashman,Jeetain Mittal
出处
期刊:ACS Macro Letters
[American Chemical Society]
日期:2023-10-19
卷期号:12 (11): 1472-1478
被引量:25
标识
DOI:10.1021/acsmacrolett.3c00456
摘要
Polymer models serve as useful tools for studying the formation and physical properties of biomolecular condensates. In recent years, the interface dividing the dense and dilute phases of condensates has been discovered to be closely related to their functionality, but the conformational preferences of the constituent proteins remain unclear. To elucidate this, we perform molecular simulations of a droplet formed by phase separation of homopolymers as a surrogate model for the prion-like low-complexity domains. By systematically analyzing the polymer conformations at different locations in the droplet, we find that the chains become compact at the droplet interface compared with the droplet interior. Further, segmental analysis revealed that the end sections of the chains are enriched at the interface to maximize conformational entropy and are more expanded than the middle sections of the chains. We find that the majority of chain segments lie tangential to the droplet surface, and only the chain ends tend to align perpendicular to the interface. These trends also hold for the natural proteins FUS LC and LAF-1 RGG, which exhibit more compact chain conformations at the interface compared to the droplet interior. Our findings provide important insights into the interfacial properties of biomolecular condensates and highlight the value of using simple polymer physics models to understand the underlying mechanisms.
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