核糖核酸
化学空间
计算生物学
空格(标点符号)
化学
RNA结合蛋白
生物
认知科学
计算机科学
细胞生物学
心理学
生物化学
遗传学
药物发现
基因
操作系统
作者
Kamyar Yazdani,Deondre Jordan,Mo Yang,Christopher R. Fullenkamp,David Calabrese,Robert E. Boer,Thomas A. Hilimire,Timothy E. H. Allen,Rabia T. Khan,John S. Schneekloth
出处
期刊:Angewandte Chemie
[Wiley]
日期:2022-12-30
卷期号:62 (11): e202211358-e202211358
被引量:57
标识
DOI:10.1002/anie.202211358
摘要
Abstract Small molecule targeting of RNA has emerged as a new frontier in medicinal chemistry, but compared to the protein targeting literature our understanding of chemical matter that binds to RNA is limited. In this study, we reported R epository O f BI nders to N ucleic acids (ROBIN), a new library of nucleic acid binders identified by small molecule microarray (SMM) screening. The complete results of 36 individual nucleic acid SMM screens against a library of 24 572 small molecules were reported (including a total of 1 627 072 interactions assayed). A set of 2 003 RNA‐binding small molecules was identified, representing the largest fully public, experimentally derived library of its kind to date. Machine learning was used to develop highly predictive and interpretable models to characterize RNA‐binding molecules. This work demonstrates that machine learning algorithms applied to experimentally derived sets of RNA binders are a powerful method to inform RNA‐targeted chemical space.
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