化学
盐桥
疏水效应
折叠(DSP实现)
侧链
水溶液
赖氨酸
化学稳定性
静电学
羧酸盐
残留物(化学)
蛋白质折叠
溶剂
结晶学
化学物理
立体化学
氨基酸
突变体
有机化学
物理化学
聚合物
生物化学
电气工程
工程类
基因
作者
Mark S. Searle,Sam Griffiths‐Jones,Henry Skinner-Smith
摘要
Analysis of the contribution of ion pairing interactions to the stability of a β-hairpin in aqueous solution has been studied quantitatively by NMR. A thermodynamic cycle has been constructed involving a combination of a single mutation (Lys→Gly) and a "pH switch" (CO2-→CO2H) to remove stepwise the contributions to stability from the interaction between the C-terminal carboxylate group of Ile16 and the side chains of Lys1 and Lys2. Turning these interactions "on" and "off" is shown to affect the chemical shifts of all residues, including those in the turn, such as to suggest that folding of the hairpin approximates to a two-state process. Two independent NMR methods have been used to analyze the thermodynamics of folding and are found to be in good agreement. Differences in hairpin stability have been analyzed in terms of an electrostatic interaction between charged groups on the terminal residues and the hydrophobic component of the Lys1 side chain: we estimate the primary electrostatic interaction to contribute 1.0−1.2 kJ mol-1 to stability, consistent with previous estimates for salt bridges in solvent-exposed sites in proteins and α-helical peptides, while the hydrophobic component is smaller but still significant (0.3−0.8 kJ mol-1). The hairpin stability is extremely sensitive to small structural perturbations (single residue mutations) or environmental changes (such as pH) providing a novel vehicle for quantitative studies of weak interactions.
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