基因分型
放大器
真菌
生物
多路复用
多重聚合酶链反应
大流行
扩增子测序
计算生物学
2019年冠状病毒病(COVID-19)
遗传学
基因型
聚合酶链反应
基因
植物
医学
病理
传染病(医学专业)
疾病
16S核糖体RNA
作者
Batiseba Tembo,Nur Uddin Mahmud,Sanjoy Paul,Soichiro Asuke,Adeline Harant,Thorsten Langner,C. Sarai Reyes-Avila,Emilie Chanclud,Vincent Were,Suwilanji Sichilima,Rabson M. Mulenga,Dipali Rani Gupta,Md. Shåbab Mehebub,Abu Naim Md. Muzahid,M. Fajle Rabby,P. K. Singh,Alison R. Bentley,Yukio Tosa,Daniel Croll,Kurt Lamour
标识
DOI:10.5281/zenodo.4605959
摘要
We report genotyping data for 186 Magnaporthe oryzae (Syn. Pyricularia oryzae) isolates from different geographical regions obtained using multiplex amplicon sequencing. The dataset consists of 84 single nucleotide polymorphisms (SNPs) selected from transcript sequences to distinguish between the clonal lineage of the wheat blast fungus that emerged in South East Asia in 2016 and other M. oryzaegenotypes. The sample coverage includes pandemic wheat blast isolates from Bangladesh (N=75, 2016-2020) and the newly reported Zambian outbreak (N=13, 2018-2020). The dataset is provided as an open science resource as part of the OpenWheatBlast initiative. We welcome analyses and feedback from the community.
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